Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04067 ATGGAGTGTTTGGAAGCAGTGTTGAAGAGCAGTTTCAGGAAAGACATGTCCCTCAAACTCAGCCCCCAAGCGTTCCCGGAGGACCTTAACATGCAAAACGTCACCGCTTGCGACGACTTCTTCGTCGACGACCTCCTCGACTTTTCGCTCCTCGAAAACGAAGAACCCGACCAACACAAACACAACCACCACTCAACCTCTGTCTCCCCCCACAACAACAACCACGACAGTTACAATTGCAACCCCTCCTTTAACGACAATTTCAATACCGAACTCACTCTTCCGGCGGAGGAAGTTGCGGACTTGGAATGGGTATCTCATTTCATCGAAGATTCTTTCTCCAAATATTCTCTTTCCTTCCCCGCAACCGTCTCACAGAGCCTCGCTGAGAAACCGCCGGAACGGGGAAACGCCGGTTTCACTTTTAAAACCCTCGTTCCGGCCAAGCCAAGAAGCAAGCGAACCAGAACCGGTGTTCGGGTTTGGCCACTCAGGTCACCCTCGTCTTTCGCCGACACGTCATCTCCCTCCAGCCCTTTGTTAATTTGCGCCGCTGCGTCTAAAGACCACCACCCGGAGGATAAGAGGGCAAAGAAACGGGCCGCGCCGGACGGTGGGGCGGCGAGACGGTGCAGCCATTGCGGCGTTCAGAAAACTCCTCAGTGGCGAACTGGGCCGCTCGGGGCGAAGACCTTGTGCAATGCGTGTGGAGTTCGGTACAAGTCGGGTCGGTTATTACCCGAATATAGACCCGCGTGTAGTCCTACTTTCTCGAGCGAGTTGCACTCGAACCACCACCGGAAGGTTCTGGAGATGCGGCAGAAGAAGGAGGCGGAGCCTGGACCGGACACCGGTTCGCCACCGTCGGTTCCCGGTTTTTGA 882 0.5544 MECLEAVLKSSFRKDMSLKLSPQAFPEDLNMQNVTACDDFFVDDLLDFSLLENEEPDQHKHNHHSTSVSPHNNNHDSYNCNPSFNDNFNTELTLPAEEVADLEWVSHFIEDSFSKYSLSFPATVSQSLAEKPPERGNAGFTFKTLVPAKPRSKRTRTGVRVWPLRSPSSFADTSSPSSPLLICAAASKDHHPEDKRAKKRAAPDGGAARRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRQKKEAEPGPDTGSPPSVPGF* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04067 293 Pfam GATA zinc finger 211 245 IPR000679 GO:0006355|GO:0043565
Phac3g04067 293 MobiDBLite consensus disorder prediction 271 293 - -
Phac3g04067 293 MobiDBLite consensus disorder prediction 187 212 - -
Phac3g04067 293 SMART GATA_3 205 259 IPR000679 GO:0006355|GO:0043565
Phac3g04067 293 MobiDBLite consensus disorder prediction 56 76 - -
Phac3g04067 293 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 203 267 - -
Phac3g04067 293 ProSitePatterns GATA-type zinc finger domain. 211 236 IPR000679 GO:0006355|GO:0043565
Phac3g04067 293 CDD ZnF_GATA 210 258 IPR000679 GO:0006355|GO:0043565
Phac3g04067 293 PIRSF Txn_fac_GATA_plant 5 286 IPR016679 GO:0003677|GO:0005634|GO:0045893
Phac3g04067 293 Gene3D - 204 278 IPR013088 GO:0006355|GO:0008270
Phac3g04067 293 FunFam GATA transcription factor 198 284 - -
Phac3g04067 293 MobiDBLite consensus disorder prediction 187 206 - -
Phac3g04067 293 PANTHER GATA TRANSCRIPTION FACTOR 27 287 - -
Phac3g04067 293 ProSiteProfiles GATA-type zinc finger domain profile. 205 241 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04067 Phac-Chr3 40080255 40082704 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04067 5 293 C2C2-Gata Transcription Factor Family AT5G66320 46.154 4.87e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phac3g04067 GATA 3.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04067 - - pvu:PHAVU_003G258900g 589.726