Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04048 ATGGCGGGTTTGTTCTCATTAAGCGGAGGGAGAGGCAGTAACAACAACCAGCAAGACACCACTACCAACAACGAGATTCCTGCAGCGGAGACCCTATTCTGGTACAGCAAAAACGACGACGTTTCATCCTACCGAGGGTTCGAGCTATGGAACCAGCAGCAGGAGCAGCATGTGATGCCCCCGCATGTGCGCCCCCTCCTGCAGCGAGATCTTTACTCGTCTGGTGTGGGACCCAGCCGAGGCGTCTCCGATGATCACTCCTCGTCTAGATCAGCGTTTGTGGCGATGCGTGCGGCGGAGGGTGGAATAAGCTGTCAGGACTGCGGGAACCAAGCCAAAAAAGATTGTCCTCACATGCGGTGCAGAACGTGCTGCAAGAGCCGAGGCTACGATTGCCAAACCCATGTCAAAAGCACTTGGGTTCCCGCTTCCAAGCGTCGCGAGCGTCAACAACAGCTCGCTGCGTTGCAAGAACAGCAGCAACAACAGAGAGACCTTTCCAAACGGCCAAGAGACCCAACTGCTTGCACTCGTTTGCCCTCGTCAGAAGGGTTAGAAGAAGGGCATTTTCCTTCACTGGTGAGTTCTCCTGCTGAGTTCAGGTGCGTGAGGGTTAGCTGCGTGGAGGATGCTGATGACAGGTATGCATATCAAACGGCTGTGAACATTGGGGGACATGTGTTCAAAGGAATCCTTTATGACTATGGTCCTGAGAATAGCAATAATAATAACAGTAATAATAGTAATAATTACATGGCTGGGGAGACCTCTGCTGGTGTTGCTGGAGCTCAGCCCTTGAACCTCACTGCTTCTGGCGTTGTCTCTTCTTCTGGAGCACTTGTTGATCCTTCCTCCTTGTATTCAGCTCCAGTCAACACTTTCATGGGTGGCAGTGGTACGCAATTCTTCCCTCACACAAGATCTTGA 927 0.521 MAGLFSLSGGRGSNNNQQDTTTNNEIPAAETLFWYSKNDDVSSYRGFELWNQQQEQHVMPPHVRPLLQRDLYSSGVGPSRGVSDDHSSSRSAFVAMRAAEGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQQLAALQEQQQQQRDLSKRPRDPTACTRLPSSEGLEEGHFPSLVSSPAEFRCVRVSCVEDADDRYAYQTAVNIGGHVFKGILYDYGPENSNNNNSNNSNNYMAGETSAGVAGAQPLNLTASGVVSSSGALVDPSSLYSAPVNTFMGGSGTQFFPHTRS* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04048 308 Coils Coil 146 169 - -
Phac3g04048 308 Pfam Domain of unknown function (DUF702) 102 238 - -
Phac3g04048 308 NCBIfam LRP1 C-terminal domain 189 237 IPR006511 -
Phac3g04048 308 MobiDBLite consensus disorder prediction 1 22 - -
Phac3g04048 308 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 292 IPR007818 GO:0003700|GO:0006355
Phac3g04048 308 MobiDBLite consensus disorder prediction 8 22 - -
Phac3g04048 308 MobiDBLite consensus disorder prediction 156 190 - -
Phac3g04048 308 NCBIfam putative zinc finger domain, LRP1 type 104 146 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04048 Phac-Chr3 39950490 39954620 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04048 1 308 C2H2 Transcription Factor Family AT3G51060 44.624 3.19e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Phac3g04048 DUF702 4.5e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04048 - - gmx:100789129 440.654