Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04012 ATGTTGAGAAGCATAGTCCGTGAACTTAAGGAGATGAGAGATGGAACAGGAAGCACATCTAAGCGGGGTGCAGAAAGCAAGCTTCGACTCAGTCGTACAAAGTCACATATTGCTCCAGATGTTATTGCAACTACATTTGAATTTATTCAACAGGGACAATGGGCAAATCTTCCAGAAGAATTGCTTTTTGACATAATCCAGAGGGTTGAAGAGAGTGAAACATCTTGGCCTGCCCGTGCTGTTGTTGTCTTCTGTGCTTCTGTATGTAAATCATGGAGGTCTATTACAAAAGAGATTGTCAAGACTCCTGAACAATGTGGAAGGATCACATTTCCTATTTCATTGAAGCAGCCCGGTCCACGTGATTCTCCAATACAGTGCTTTATCAGGAGGAGCAAAGAAAGTTCTACATATCTGTTGTACTTTGGCCTGGTTCCATCAGAGAATGACAATAACAAATTGTTATTAGCGGCCAAAAGGATAAGAAGGGCAACAGGCACTGATTTTGTCATATCCTTGGCCACAGATGATTTTTCTCGAGCCAGCAATAAATATGTTGGTAAACTGAGGTCTAATTTTTTGGGTACCAAGTTCACCATATATGACAGTCAACCTCCCCGTGATGCTGCAATTCAACCAAATTGTCAATCTAATAGGAGATTTCATTCTAAGCAGGTGTCACCAAGAGTTCCAGCTTGTAGCTACCTTGTTAGCACAGTTTCCTACGAGCTGAATGTCCTTTGCACTAGAGGGCCAAGAAGAATGCATTGCGTCATGAACTCTATACCCGTCTCAGCAATTCAGGAAGGGGGCAACGCCCCAACTCCAACTTCTTTCCCTCAAATATTTGATGAACCTTTTTCTCCTTCACCAGCAGCGAAAGAAAAAGTTCCAGTCCCCGATTTAAACTCTGCAAGCTTATCAGAGCCACCAATATCGAGCCAAGCCTCAAGTGAGCAATTAGCACTGAAAAACAAGGCTCCAAGATGGCATGAGCAGCTACAGTGCTGGTGCCTAAACTTCAAAGGTCGTGTGTCTGTGGCTTCTGTTAAGAACTTTCAGCTTGTAGCTGCTGTTGATCCATCACATAACATTTCTGCTGAGGAGCAAGACAAGGTAATCCTGCAGTTTGGAAAGATTGGAAAAGACATATTCACCATGGATTACCGTTATCCACTCTCTACCTTCCAAGCCTTTGCCATCTGCTTGAGTAGCTTTGACACTAAACCAGCCTGCGAATGA 1242 0.4332 MLRSIVRELKEMRDGTGSTSKRGAESKLRLSRTKSHIAPDVIATTFEFIQQGQWANLPEELLFDIIQRVEESETSWPARAVVVFCASVCKSWRSITKEIVKTPEQCGRITFPISLKQPGPRDSPIQCFIRRSKESSTYLLYFGLVPSENDNNKLLLAAKRIRRATGTDFVISLATDDFSRASNKYVGKLRSNFLGTKFTIYDSQPPRDAAIQPNCQSNRRFHSKQVSPRVPACSYLVSTVSYELNVLCTRGPRRMHCVMNSIPVSAIQEGGNAPTPTSFPQIFDEPFSPSPAAKEKVPVPDLNSASLSEPPISSQASSEQLALKNKAPRWHEQLQCWCLNFKGRVSVASVKNFQLVAAVDPSHNISAEEQDKVILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPACE* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04012 413 CDD F-box_AtTLP-like 54 98 - -
Phac3g04012 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Phac3g04012 413 Gene3D Tubby Protein; Chain A 112 413 IPR025659 -
Phac3g04012 413 Pfam F-box domain 54 101 IPR001810 GO:0005515
Phac3g04012 413 SUPERFAMILY Tubby C-terminal domain-like 103 413 IPR025659 -
Phac3g04012 413 MobiDBLite consensus disorder prediction 290 313 - -
Phac3g04012 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Phac3g04012 413 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Phac3g04012 413 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Phac3g04012 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Phac3g04012 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Phac3g04012 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Phac3g04012 413 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Phac3g04012 413 Pfam Tub family 115 408 IPR000007 -
Phac3g04012 413 Gene3D - 48 100 - -
Phac3g04012 413 SUPERFAMILY F-box domain 50 98 IPR036047 GO:0005515
Phac3g04012 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Phac3g04012 413 PANTHER TUBBY-RELATED 40 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04012 Phac-Chr3 39644136 39652922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04012 2 413 TUB Transcription Factor Family AT2G18280 62.110 0.0 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Phac3g04012 Tub 1.9e-106 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04012 K19600 - gmx:100805380 771.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g04012 3 39644136 39652922 Phac3g04012 3 39644136 39652922 ECH
Phac3g04012 3 39644136 39652922 Phac2g02566 2 26830406 26833730 ECH
Phac2g02566 2 26830406 26833730 Phac3g04012 3 39644136 39652922 PCT