Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04009 ATGGGAACTGATGGCAGTGAACTGGTAGAGACATTACCAAATCCTTGCTCTTTTAAGGTGCATCGTGCAATGTGCACGGAACTCAGGAAATTAGTTGCTAGAATCTTGCGGATAATTCCACGTATAGAAGAAGCACGTCCTTGCGGAATGCAGGCTCTGTGTTTGCTCAACAGTGCAATTGATAAAGCCGCACAACTCCTACTATACTGCTCTGAATCTAGTAAACTCTACCTGGCAATGACAGGGGATTCCATACTCTCAAAATGCCAGAAGGCAAGAAAATCGATAGTAAAAAACTTAGTCCAGATTCTGAATATGGTTCCGGTGATGTTGGCTGCAGAGATTTCTCTACTAATTGGTGATCTTGAGTGTGTCACATTTGGCCTCGACTCAGCGGAAGAAGCAGCTGGGAAGGTTTTGAAACAATTGCTCCAGCAAGATTCTTCAACATCAGATAATGATTCAATGGAAGAATCTGAAATAAAACATTTTCAGTTTGTAGCAGCAAGACTTAGTATTACATCCTCATCGGCCATCTTAATAGAGAAACGATCGATTCAGAAGTTGCTAAAACAAGTCAGACCAAATAAACAGCAAAAAGAGATTGTCTTGAAAAATCTTTTGTATCTCTTGCTAAAGCACAAAAAATCAATCACCGGAGAACAAATTGAGGTCTATTTCCAAAGTGAAGGACCAATCACAACTGAGAACTCAGTTCACGAGTCTCAAAGCATCCTTCATGTCAAGTCAGACCCATACTTGAACCATGATCAATATAGGACTCAGGCCAATGAGTTGGGCAGACTTACACCTCCTGAGGAATATACATGCCCAATATCTTTAAGGTTGATGTATGACCCTGTTGTCATTGCTTCAGGAGAAACATATGAAAGGATGTGGATACAAAAGTGGTTTGATGAGGGTAATACTATATGCCCGAAAACAAAAAAGAAACTGGAACATATGGCATTGACTCCAAATGTTGTCTTCAAGGACCTAATATTAAAGTGGTGTGAAACTAATGGAGTCTCCATTCCTGACCCAAATAGACAAGTGCAACATTTGCATTCATGGGAAGCTTCCTTCAATTCCATTAAGAGTTTTGGAAGTTCTTTGTATGATTTAAACTTCCAAATGGATCTTAGTAACTTGTCACTTGGATCTTTAGAGACCAGTTATAATTCAGATTCCTTTCATGCTAAGGCCAATCATGGCTTAGATTTGATATTGAACAAGACCGGTGCCAATTCTCCCAGGCATCAATCTCATGCAGAGATTCATGATGTTGTTCTGAAGCCCTTGTCTAAACTCCATGAACGTCAATGGCAATCTCAATGCCAACTCATTGAAGATATGAAAATAGATTTCAAATGCAATAACCATACTCTTTGCTCTGTGCCATCTGAGAATTTCGTTGACCCACTCACGAGATTTCTGAGCACTGCCTGTGAGAGACATGATGTAAAAGCTCTGAGATCTGGAACTAAATTGCTATTGGAATTTATGAAGTGCTGCCGCAATGGTATGACCAATTTAAGTGAAGATACATGCATTATGTTGGCAAGTCTTCTTGACACAGAAGTGATTGGTGAAGCTCTTACCATAATGGGAGAGTTGGCAGGAAATTGGTATGAGAAAGCTAACATTGCTGCTTCCACTGTACTCACTTCTATTTCAAAGATCCTTGATTTGGGTAGCAAAGAGTTTCAAGGAAAAGCTATTAAAATAATGCTTAATTTTTCATCCAATAGTCAAATTTGTCCCTACATGGTATCTCTCGGATGCATCCCAAAATTACTGCCATTTTTTGAAGACAAAACCCTTTCAAGAGACTGTATACATATTTTGAAAAACCTTTGTGATACTGAAGAGGGTAGGGTTTCTGTGGTTGAAACAAAAGGATGCATATATTCTGTTGTTGAAATACTTGGGACTGGCAGTGATGAGGAAAAAGAACCGGCACTTGATATTCTACTCTCTTTATGCTCTCAACGTGTGGAATACTGTCAAATGATTATGAATGAGGGTATTATTCCTTCTCTTGTGGACATCTCCAATTCAGGAAGTGATATGGCAAAGGCTTTTGCACTTGAACTACTACGTCTTTTGAGGACGGAGTTTGAGGATGAAGACTGCTATGAGCCAAATTTCAATGCCTCTCAAGAATCTACCAATCTCTATCAAGAAAAAAAATCATCAAAGAAACCTTCCATTTTGAAGAGACTATCAATCTTCTCAAAATCGAGTTCAGTTGCACCAAAAAACAAGAGATGA 2274 0.3905 MGTDGSELVETLPNPCSFKVHRAMCTELRKLVARILRIIPRIEEARPCGMQALCLLNSAIDKAAQLLLYCSESSKLYLAMTGDSILSKCQKARKSIVKNLVQILNMVPVMLAAEISLLIGDLECVTFGLDSAEEAAGKVLKQLLQQDSSTSDNDSMEESEIKHFQFVAARLSITSSSAILIEKRSIQKLLKQVRPNKQQKEIVLKNLLYLLLKHKKSITGEQIEVYFQSEGPITTENSVHESQSILHVKSDPYLNHDQYRTQANELGRLTPPEEYTCPISLRLMYDPVVIASGETYERMWIQKWFDEGNTICPKTKKKLEHMALTPNVVFKDLILKWCETNGVSIPDPNRQVQHLHSWEASFNSIKSFGSSLYDLNFQMDLSNLSLGSLETSYNSDSFHAKANHGLDLILNKTGANSPRHQSHAEIHDVVLKPLSKLHERQWQSQCQLIEDMKIDFKCNNHTLCSVPSENFVDPLTRFLSTACERHDVKALRSGTKLLLEFMKCCRNGMTNLSEDTCIMLASLLDTEVIGEALTIMGELAGNWYEKANIAASTVLTSISKILDLGSKEFQGKAIKIMLNFSSNSQICPYMVSLGCIPKLLPFFEDKTLSRDCIHILKNLCDTEEGRVSVVETKGCIYSVVEILGTGSDEEKEPALDILLSLCSQRVEYCQMIMNEGIIPSLVDISNSGSDMAKAFALELLRLLRTEFEDEDCYEPNFNASQESTNLYQEKKSSKKPSILKRLSIFSKSSSVAPKNKR* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04009 757 Gene3D - 433 715 IPR011989 -
Phac3g04009 757 FunFam RING-type E3 ubiquitin transferase 270 342 - -
Phac3g04009 757 SUPERFAMILY RING/U-box 263 347 - -
Phac3g04009 757 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Phac3g04009 757 Pfam U-box domain 272 341 IPR003613 GO:0004842|GO:0016567
Phac3g04009 757 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 345 IPR013083 -
Phac3g04009 757 PANTHER U BOX DOMAIN-CONTAINING 23 704 - -
Phac3g04009 757 SMART arm_5 665 705 IPR000225 GO:0005515
Phac3g04009 757 SMART arm_5 583 621 IPR000225 GO:0005515
Phac3g04009 757 SMART arm_5 622 663 IPR000225 GO:0005515
Phac3g04009 757 CDD RING-Ubox_PUB 272 321 IPR045210 -
Phac3g04009 757 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Phac3g04009 757 SUPERFAMILY ARM repeat 437 705 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04009 Phac-Chr3 39625033 39630541 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04009 15 703 U-box Gene Family AT4G36550 37.006 1.56e-128 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04009 - - gmx:100798951 1202.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g04009 3 39625033 39630541 Phac3g04009 3 39625033 39630541 ECH
Phac3g04009 3 39625033 39630541 Phac2g02558 2 26822626 26828583 ECH
Phac2g02558 2 26822626 26828583 Phac3g04009 3 39625033 39630541 PCT