Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04008 ATGGGAACTGATGGCAGTGAACTGGTAGAGACATTACCAAATCCTTGCTCTTTTAAGGTGCATCGTGCAATGTGCACGGAACTCAGGAAATTAGTTGCTAGAATCTTGCGGATAATTCCACGTATAGAAGAAGCACGTCCTTGCGGAATGCAGGCTCTGTGTTTGCTCAACAGTGCAATTGATAAAGCCGCACAACTCCTACTATACTGCTCTGAATCTAGTAAACTCTACCTGGCAATGACAGGGGATTCCATACTCTCAAAATGCCAGAAGGCAAGAAAATCGATAGTAAAAAACTTAGTCCAGATTCTGAATATGGTTCCGGTGATGTTGGCTGCAGAGATTTCTCTACTAATTGGTGATCTTGAGTGTGTCACATTTGGCCTCGACTCAGCGGAAGAAGCAGCTGGGAAGGTTTTGAAACAATTGCTCCAGCAAGATTCTTCAACATCAGATAATGATTCAATGGAAGAATCTGAAATAAAACATTTTCAGTTTGTAGCAGCAAGACTTAGTATTACATCCTCATCGGCCATCTTAATAGAGAAACGATCGATTCAGAAGTTGCTAAAACAAGTCAGACCAAATAAACAGCAAAAAGAGATTGTCTTGAAAAATCTTTTGTATCTCTTGCTAAAGCACAAAAAATCAATCACCGGAGAACAAATTGAGGTCTATTTCCAAAGTGAAGGACCAATCACAACTGAGAACTCAGTTCACGAGTCTCAAAGCATCCTTCATGTCAAGTCAGACCCATACTTGAACCATGATCAATATAGGACTCAGGCCAATGAGTTGGGCAGACTTACACCTCCTGAGGAATATACATGCCCAATATCTTTAAGGTTGATGTATGACCCTGTTGTCATTGCTTCAGGAGAAACATATGAAAGGATGTGGATACAAAAGTGGTTTGATGAGGGTAATACTATATGCCCGAAAACAAAAAAGAAACTGGAACATATGGCATTGACTCCAAATGTTGTCTTCAAGGACCTAATATTAAAGTGGTGTGAAACTAATGGAGTCTCCATTCCTGACCCAAATAGACAAGTGCAACATTTGCATTCATGGGAAGCTTCCTTCAATTCCATTAAGAGTTTTGGAAGTTCTTTGTATGATTTAAACTTCCAAATGGATCTTAGTAACTTGTCACTTGGATCTTTAGAGACCAGTTATAATTCAGATTCCTTTCATGCTAAGGCCAATCATGGCTTAGATTTGATATTGAACAAGACCGGTGCCAATTCTCCCAGGCATCAATCTCATGCAGAGATTCATGATGTTGTTCTGAAGCCCTTGTCTAAACTCCATGAACGTCAATGGCAATCTCAATGCCAACTCATTGAAGATATGAAAATAGATTTCAAATGCAATAACCATACTCTTTGCTCTGTGCCATCTGAGAATTTCGTTGACCCACTCACGAGATTTCTGAGCACTGCCTGTGAGAGACATGATGTAAAAGCTCTGAGATCTGGAACTAAATTGCTATTGGAATTTATGAAGTGCTGCCGGTACAATTTCCTTTTCCCTTGCAATTTGGTTCTTGGTTCATTGTTAGTTATTTCGATTAGCTTGCATTTGTCTGGTTTAATTTGTTACCTTGTGAATTTTATGGATTTTTTAACAATTATTGGTTGA 1644 0.3917 MGTDGSELVETLPNPCSFKVHRAMCTELRKLVARILRIIPRIEEARPCGMQALCLLNSAIDKAAQLLLYCSESSKLYLAMTGDSILSKCQKARKSIVKNLVQILNMVPVMLAAEISLLIGDLECVTFGLDSAEEAAGKVLKQLLQQDSSTSDNDSMEESEIKHFQFVAARLSITSSSAILIEKRSIQKLLKQVRPNKQQKEIVLKNLLYLLLKHKKSITGEQIEVYFQSEGPITTENSVHESQSILHVKSDPYLNHDQYRTQANELGRLTPPEEYTCPISLRLMYDPVVIASGETYERMWIQKWFDEGNTICPKTKKKLEHMALTPNVVFKDLILKWCETNGVSIPDPNRQVQHLHSWEASFNSIKSFGSSLYDLNFQMDLSNLSLGSLETSYNSDSFHAKANHGLDLILNKTGANSPRHQSHAEIHDVVLKPLSKLHERQWQSQCQLIEDMKIDFKCNNHTLCSVPSENFVDPLTRFLSTACERHDVKALRSGTKLLLEFMKCCRYNFLFPCNLVLGSLLVISISLHLSGLICYLVNFMDFLTIIG* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04008 547 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Phac3g04008 547 FunFam RING-type E3 ubiquitin transferase 270 342 - -
Phac3g04008 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 345 IPR013083 -
Phac3g04008 547 PANTHER U BOX DOMAIN-CONTAINING 23 479 - -
Phac3g04008 547 Pfam U-box domain 272 341 IPR003613 GO:0004842|GO:0016567
Phac3g04008 547 SUPERFAMILY RING/U-box 263 347 - -
Phac3g04008 547 CDD RING-Ubox_PUB 272 321 IPR045210 -
Phac3g04008 547 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04008 Phac-Chr3 39625033 39630541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04008 15 506 U-box Gene Family AT4G36550 36.220 2.51e-85 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04008 - - gmx:100798951 806.594