Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g04004 ATGGATATGAGAGAGCAAGATAAGGTAATAGAGATGCCTAGCACTTTGGGTTATAACCTTCCCAATACAAATTCATCTTCTTCCAAGCTATCGTCACTAATAGGGGAAAGAAGTGACCAACCTCCTCAATCTCACACATTGGTTTTCAGTGATCCACCCCAAACAAATTCACATCATCACCGTCGTCTCACCCCCCCTAATTCTCTTCCACCAAACCCTCTTCAACTTCCTCACCCTCACAGACCCAGAAGAGATCTAGATCCAACTGCTATTTCTCCTCCTATCATAACCACCTCAAGAACACAACCACACTCAACCGGAACTTTCACAGCAACAGTCAGATACCGAGAATGTCTAAAGAATCATGCTGCAAGCATGGGGGGTCATGTCACAGATGGATGTGGAGAGTTTATGCCAAGTGGAGAAGAAGGCACCCCAGAATCCTTCAAGTGTGCAGCTTGTGAGTGCCACCGCAATTTCCACAGAAAAGAACCTGAAGGCGAGTCATCACAACATGTTCTCAACTACCACCTCACTTACCCCAACAAAACCAATAGAAACATTGTTATTCATTCTCCGCAATCTCATCTTCAGTTACCTACACACCACCTTCACGGGGTGGTGGCCACCCCTTCAGGTGGGTCGGTTCAGCCCGCGGTGCTGGGCTTTGGGGGGACCCCAACTGAGTCCTCAAGCGAAGATCTCAACATGTTTCAGACCGATGATGCAGGGCAATTGTTATCAGTGCAGCCACCCCTGTCATCATCCAAGAAGAGGTTCAGGACCAAGTTCTCACAGCAACAAAAGGATCAGATGATGGAGTTTGCTGATAAACTTGGGTGGAAGATCCAGAAACAAGATGAACAGGAACTGCATCAGTTTTGCTCTCAGGTTGGTGTAAAAAGACAGGTTTTCAAGGTTTGGATGCACAACAGCAAGCAAGCCATGAAGAAGAAGCAAATGTAA 966 0.4669 MDMREQDKVIEMPSTLGYNLPNTNSSSSKLSSLIGERSDQPPQSHTLVFSDPPQTNSHHHRRLTPPNSLPPNPLQLPHPHRPRRDLDPTAISPPIITTSRTQPHSTGTFTATVRYRECLKNHAASMGGHVTDGCGEFMPSGEEGTPESFKCAACECHRNFHRKEPEGESSQHVLNYHLTYPNKTNRNIVIHSPQSHLQLPTHHLHGVVATPSGGSVQPAVLGFGGTPTESSSEDLNMFQTDDAGQLLSVQPPLSSSKKRFRTKFSQQQKDQMMEFADKLGWKIQKQDEQELHQFCSQVGVKRQVFKVWMHNSKQAMKKKQM* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g04004 321 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 90 314 - -
Phac3g04004 321 MobiDBLite consensus disorder prediction 1 106 - -
Phac3g04004 321 FunFam Zinc-finger homeodomain protein 2 248 318 - -
Phac3g04004 321 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 114 164 IPR006456 -
Phac3g04004 321 NCBIfam homeobox domain, ZF-HD class 257 314 IPR006455 -
Phac3g04004 321 Gene3D - 247 318 - -
Phac3g04004 321 Pfam ZF-HD protein dimerisation region 113 165 IPR006456 -
Phac3g04004 321 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 115 164 IPR006456 -
Phac3g04004 321 SUPERFAMILY Homeodomain-like 251 318 IPR009057 -
Phac3g04004 321 MobiDBLite consensus disorder prediction 92 106 - -
Phac3g04004 321 MobiDBLite consensus disorder prediction 16 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g04004 Phac-Chr3 39585480 39587663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g04004 112 318 ZF-HD Transcription Factor Family AT1G75240 49.782 1.49e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Phac3g04004 ZF-HD_dimer 8.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g04004 - - ccaj:109810490 463.381