Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phac3g03944 | ATGAACTACGTAGAATCAGCAGTAGAAGTGATAAGCAGAGAAACAGTAGATGTATTTAACAGTATTATAGAAGCTTCGAAGTATGAATTTTTTGTGGATCGGGCTTTCGCTATTATATTTGCTACGGATATGGATTGTATATGGACTCTTGCGGATAAAGAAGGGAACGTTTTTAAAGTGCGTTATAATATGGACATGCACAATCCTTTGATAGTTCAAGGTTGCGATGAAATGCTTCAGTTGTACGCCTTAAAAGAAGGATCTCACCAAATTATCTTCCGTTACGTGGGGGATAGCTCTTTTGATATAACCATATCTGAGGAGACGTTATCCGAAAATTCTGTTGTAGATTTTCTTCTAGAGATTGAAAATCGAAGTTCATTAACGTATCATGCACTTGTGCATTTTACATTAACTTTGACTGCTTCCCAGTGCACAGCAAGTCATCTGGATTTGCCTGTGACTTTCGCAGATTATATGCGTAGAGGTAGATTAAAAAATGTCACTTTGTACGGACCAAACGAGCAGGTGCAATGTAAAGTTTTAATGCGGAATGTTCCCAAAAAAACTGTCAAATTGGGAAGTGGATGGAAAGAATTCTGCAGGGAACACTCACTTCAAGAGAATGATATAATTATTTTTGAAGCAGATGATGAGCAAGCATGGCAACACTTTCGAGTTATTATTAGGAGAAAAAATTTGATTGAAAGTTTATTGTAA | 720 | 0.3653 | MNYVESAVEVISRETVDVFNSIIEASKYEFFVDRAFAIIFATDMDCIWTLADKEGNVFKVRYNMDMHNPLIVQGCDEMLQLYALKEGSHQIIFRYVGDSSFDITISEETLSENSVVDFLLEIENRSSLTYHALVHFTLTLTASQCTASHLDLPVTFADYMRRGRLKNVTLYGPNEQVQCKVLMRNVPKKTVKLGSGWKEFCREHSLQENDIIIFEADDEQAWQHFRVIIRRKNLIESLL* | 240 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phac3g03944 | 239 | Pfam | B3 DNA binding domain | 136 | 232 | IPR003340 | GO:0003677 | |
| Phac3g03944 | 239 | Gene3D | - | 121 | 233 | IPR015300 | - | |
| Phac3g03944 | 239 | SUPERFAMILY | DNA-binding pseudobarrel domain | 134 | 233 | IPR015300 | - | |
| Phac3g03944 | 239 | CDD | B3_DNA | 135 | 231 | IPR003340 | GO:0003677 | |
| Phac3g03944 | 239 | ProSiteProfiles | B3 DNA-binding domain profile. | 135 | 233 | IPR003340 | GO:0003677 | |
| Phac3g03944 | 239 | SUPERFAMILY | DNA-binding pseudobarrel domain | 29 | 106 | IPR015300 | - | |
| Phac3g03944 | 239 | SMART | B3_2 | 136 | 233 | IPR003340 | GO:0003677 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phac3g03944 | Phac-Chr3 | 39034891 | 39035812 | Dispersed/Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | B3 | Phac3g03944 | B3 | 3.2e-11 | CL0405 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phac3g03944 | - | - | vun:114184752 | 170.629 |