Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03943 ATGCTGGGCGCAAATTTGATAACACTAAGGAGAAACTTGGGCAATAGGACGCCGATTGTTCAAGCACGAATTACACAATTGGGAACAAAGTTGATGAGTCTTTCAGCGATGAGGATAGTGTATGATAAAGACAGTGGCAGGTCTAGAGGCTTTGGATTTATCATTTTTTCAAATGAAGATGATGCCAAATGTGCAAAGGAAGCAATGGATGGAAAGGCACTGTTAGGCAGACCATTGAGGATAAGTATTGCACTTGAGAAGGCCCGAGGTGTACCAGTTGTAGTTCCTCGACTTTCAGATATTGGGCATTTGAACAGGCGCTAA 324 0.429 MLGANLITLRRNLGNRTPIVQARITQLGTKLMSLSAMRIVYDKDSGRSRGFGFIIFSNEDDAKCAKEAMDGKALLGRPLRISIALEKARGVPVVVPRLSDIGHLNRR* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03943 107 Gene3D - 18 90 IPR012677 -
Phac3g03943 107 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 80 IPR000504 GO:0003723
Phac3g03943 107 SUPERFAMILY RNA-binding domain, RBD 37 90 IPR035979 GO:0003676
Phac3g03943 107 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 37 88 - -
Phac3g03943 107 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 86 IPR000504 GO:0003723
Phac3g03943 107 SMART rrm1_1 8 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03943 Phac-Chr3 39026047 39026852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03943 44 87 Eukaryotic Initiation Factors Gene Family AT3G16380 40.909 1.48e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03943 - - pvu:PHAVU_003G2503000 142.124