LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac3g03866	ATGCGGTGGTTACCCACGCTTTCCTTCGCGCCTTCCAGTTCATCCTCGTCTTCCTCCGCAGCTGCCACCGACCACCGCCGGAAGCCCAAGCTATTCGGTAATTCGTCCAAGAAGCGCGCCTGCCACGTCGTCGAGAACGATGTCAGGTCGCTTGATGAAGATTCTCCCTTCCCTTCCCCCGGCACGTCTCAGCCCTTGCCCCTGCCGGAGCTCGCCGCCGCCCCGGCCCTAGTCCGTAACAAAGACGGCGAGCGCCGTCTTCCCTCGCCCAAGGATGCTGCTACAGCCACCGCCACCACCGGCTTTCAGATGCGGAGTGTTTTTGCTAGCCAAGACACGAGAAGGAATATGGAACAGGCTGAAACTAGGTCATCGAGAATGGTGCATCAAGATGCGAGTGGTTGTTGTGAGAGTGCTCGAGATAACAGTAATACAAATAATAGTAACTTGGTGAGCGTCCCTCATAGGAGCACTATTTCAGGTAGTCCCTTTGCAAGTCCTTTAATGAGTCCACAGAATACAAAAAATGGTGAATTTGTGCCATATTATTATGCGAGTCCCAAAGGAAATCAGTTCTGGTCTGCACCAGAAATGTCTATCTGTGAAACAGGGTTGCTACCTCCTGCCTTCTTTGATCTATCCGTGTCAGGCACAGAAACTTCTCCCCCTCCCACCTCCCATCAAAGTCCACAGTGGAAAAGTCCCCAGCAACACGCCAGAACAATGAGTGGACCTCCATCCCCTATACATTCCAAGTTATCACTTGAACTCTCAATGGTGCGCCGTGAAAGTAGTGCTCCTCCTGTCAGTGTTCACCCCTTGCCCCTGCCTCCCGGGGCTGCCCTGCCCTCTCCACCAGCGGTTGGTACATTTTCCCATGTTAGGTCAGAATCATTGCCAATGAAAAACCAATGGAAGAAAGGGAAACTTATTGGGCGTGGGACATTTGGAAGTGTTTATGTTGCAACCAATAGGGAAACCGGGGCATTATGTGCGATGAAGGAAGTAGAAATATTTCCTGATGATCCAAAATCTGCAGAGTGTATAAAACAGTTAGAGCAGGAAATTAAAGTTCTTAGCCAGCTGAAGCATTCAAACATCGTGCAGTATTATGGCAGTGAAATCGTTAATGACCGATTTTATATTTATCTGGAATATGTTCATCCTGGTTCAATTAATAAATACGTCCGTGAGCATTGTGGTGCCATAACAGAATCTGTCATTCGAAATTTCACTCGACATATTCTATCAGGGTTGGCTTATTTACATAACAAAAAAACAATTCATAGGGACATCAAAGGGGCTAACTTGCTTGTTGACTCTGCTGGAGTTGTTAAGCTTGCTGATTTTGGGATGGCTAAGCATCTAACTGGGTTCGAAGGTAATCTTTCTTTGAGGGGAAGTCCGTATTGGATGGCTCCAGAGCTTTTGCAGGCTGTGATGCAAAAGGATAACAGTCCTGATCTTGCTTTTGCTAGTGATATTTGGAGTCTGGGTTGTACCATCATTGAAATGTTCACAGGGAAGCCTCCTTGGAGTGAATATGAAGGAGCCGCAGCTCTGTTTAAGGTTATGAAGGAAACCCCTACTATTCCTGAAACATTGTCACCGGAGGGTAAAGATTTCTTGAGGTGCTGCTTTAAAAGAAATCCAGCAGAGCGGCCAGCAGCTGCAGTTTTACTAGAACATCGATTTTTGAAAAACTCTCAACAGCCTGATGTTTTATCTCCCACTCAGCTCTATAATGGAACAGGCCTCATGGACAAACCACACGGTCCCATTCAACAATCTGAATATAAACTTGATCAGTCGTCAATTTCCTGTGCAAACATTGCCAAGGGTAAAGCAGCTGACAGGCGTGGATTTCCCATTCCTTCCTTGGATATTCTTCCTGCATCCTTGGGCCAATAA	1911	0.472	MRWLPTLSFAPSSSSSSSSAAATDHRRKPKLFGNSSKKRACHVVENDVRSLDEDSPFPSPGTSQPLPLPELAAAPALVRNKDGERRLPSPKDAATATATTGFQMRSVFASQDTRRNMEQAETRSSRMVHQDASGCCESARDNSNTNNSNLVSVPHRSTISGSPFASPLMSPQNTKNGEFVPYYYASPKGNQFWSAPEMSICETGLLPPAFFDLSVSGTETSPPPTSHQSPQWKSPQQHARTMSGPPSPIHSKLSLELSMVRRESSAPPVSVHPLPLPPGAALPSPPAVGTFSHVRSESLPMKNQWKKGKLIGRGTFGSVYVATNRETGALCAMKEVEIFPDDPKSAECIKQLEQEIKVLSQLKHSNIVQYYGSEIVNDRFYIYLEYVHPGSINKYVREHCGAITESVIRNFTRHILSGLAYLHNKKTIHRDIKGANLLVDSAGVVKLADFGMAKHLTGFEGNLSLRGSPYWMAPELLQAVMQKDNSPDLAFASDIWSLGCTIIEMFTGKPPWSEYEGAAALFKVMKETPTIPETLSPEGKDFLRCCFKRNPAERPAAAVLLEHRFLKNSQQPDVLSPTQLYNGTGLMDKPHGPIQQSEYKLDQSSISCANIAKGKAADRRGFPIPSLDILPASLGQ*	637

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac3g03866	636	SMART	serkin_6	305	566	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac3g03866	636	ProSiteProfiles	Protein kinase domain profile.	305	566	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac3g03866	636	MobiDBLite	consensus disorder prediction	7	22	-	-
	Phac3g03866	636	FunFam	Mitogen-activated protein kinase kinase kinase 5	302	603	-	-
	Phac3g03866	636	PRINTS	Tyrosine kinase catalytic domain signature	384	397	IPR001245	GO:0004672\|GO:0006468
	Phac3g03866	636	PRINTS	Tyrosine kinase catalytic domain signature	421	439	IPR001245	GO:0004672\|GO:0006468
	Phac3g03866	636	PRINTS	Tyrosine kinase catalytic domain signature	493	515	IPR001245	GO:0004672\|GO:0006468
	Phac3g03866	636	PRINTS	Tyrosine kinase catalytic domain signature	535	557	IPR001245	GO:0004672\|GO:0006468
	Phac3g03866	636	MobiDBLite	consensus disorder prediction	1	69	-	-
	Phac3g03866	636	MobiDBLite	consensus disorder prediction	214	248	-	-
	Phac3g03866	636	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	13	579	-	-
	Phac3g03866	636	MobiDBLite	consensus disorder prediction	214	251	-	-
	Phac3g03866	636	Pfam	Protein kinase domain	306	566	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac3g03866	636	ProSitePatterns	Protein kinases ATP-binding region signature.	311	334	IPR017441	GO:0005524
	Phac3g03866	636	SUPERFAMILY	Protein kinase-like (PK-like)	296	590	IPR011009	-
	Phac3g03866	636	Gene3D	Transferase(Phosphotransferase) domain 1	301	588	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac3g03866	Phac-Chr3	38497231	38502668	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac3g03866	123	603	MAP Kinase Kinase Kinase	AT5G66850	60.707	0.0	600

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Phac3g03866		Pkinase	9.1e-66	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac3g03866	-		-	gmx:100790701	965.681