Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03840 ATGGATAAACAAAACAAGGTGGTGGAGAATAAATACAAACGATTGAATAATAATCAGACCAAGCAAGCAACGCCTGCTGAGGCTCAGAAGTTTTCAAGTTCCATGAAGGCTGCAGTAGAAGGAACATCCTCTCGTGGTGAGGTCATGTCATCTGCAGTTCTTCAAGCAGAGGAGGTCCAATCAAATTTGAGACCAGAATTTCCTAGTTTTGTGAAGTCTTTAATTAGATCACATGTTGCTAGTTGTTTTGGGATGGGCCTTCCTGTGTCCTTCTGCAAAAGACACTTACCAGATAAGGATACAACAATCATTTTGGAAGATGAACATGGTAAAGAATACAATACAAAATTCATTGCCTGTAAGATGGTATTGAGTGCTGGATGGAGACAGTTTTCTGCTGAGCACAAATTGCAGGAAGGTGATGCGGTGGTCTTTCAATTAGTTGAACCAACCAAATTTAAGATTTATATAATAAGAGCTAATAATACGAGGGAACTAGACGGGGCCTTTCTGAATCTTGATAGTTGCAATAAACAAAAAATGGGAGGCAAAGATAACACAGATACTGATGTTGTGACATGCAATAGCTCAAAGAGAAAGCATGGCAAATCTGTCCCACTAGATATCCAAAAGAAAAAGAAGGCAAACTTGTCGAGATTGAGACCCAAGGCCGGGCCATCAGTAGAACAATCGGAAAATGATAGCGAGGAATCTCTTTCAGAAGTTGTGGAGGAGTTTAAAATACTTGAGTTTGAAGATATGAGAGGCTTTGAAAATTTTAGCATCATAGTTGAGGGAGTGTCAATAGATGTTGAATTTCCTACCGAAGTTAGAAACAAGTACTACAGGCTATGCTGCAGTCAGCATGCATTTCTTCATGAGAATCTCATCAAGGGCATGAACTATAAGCTGATTGCTGGAATTATATCTGAAACTGTCAACATTGCTGATGCCATAAGGGTTAGTGTGATATGCACCCCACGTTTTGAATTTGCTAACTGGGACAAAACATTGCTAGCCTTTGAGCATCTGGGCATGAATGTTGAGTTTCTAAGGATCCGATTACGCCGGCTTGTAAGCATTGCTTATGAGAAAAATGATGTCTCAGAGGCCAAAAAGTACTTGGCATATAGAAATGAGCCCAGTCGTGCAGACGATGAAATAAGGAACATGGAAGTCAAGCTTGAAGAATTGAAGGGAGCATGTAATGGTTTTGGTGCTTATCTTGGGAGTTTGAAGGGCAAAGCTGAAAACTATCAGATGAAGTTTCGAAGAGAAGTCGATGCTCCTTGGTGA 1296 0.4028 MDKQNKVVENKYKRLNNNQTKQATPAEAQKFSSSMKAAVEGTSSRGEVMSSAVLQAEEVQSNLRPEFPSFVKSLIRSHVASCFGMGLPVSFCKRHLPDKDTTIILEDEHGKEYNTKFIACKMVLSAGWRQFSAEHKLQEGDAVVFQLVEPTKFKIYIIRANNTRELDGAFLNLDSCNKQKMGGKDNTDTDVVTCNSSKRKHGKSVPLDIQKKKKANLSRLRPKAGPSVEQSENDSEESLSEVVEEFKILEFEDMRGFENFSIIVEGVSIDVEFPTEVRNKYYRLCCSQHAFLHENLIKGMNYKLIAGIISETVNIADAIRVSVICTPRFEFANWDKTLLAFEHLGMNVEFLRIRLRRLVSIAYEKNDVSEAKKYLAYRNEPSRADDEIRNMEVKLEELKGACNGFGAYLGSLKGKAENYQMKFRREVDAPW* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03840 431 MobiDBLite consensus disorder prediction 1 37 - -
Phac3g03840 431 ProSiteProfiles B3 DNA-binding domain profile. 70 161 IPR003340 GO:0003677
Phac3g03840 431 SMART B3_2 70 161 IPR003340 GO:0003677
Phac3g03840 431 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 13 163 IPR044837 -
Phac3g03840 431 MobiDBLite consensus disorder prediction 11 37 - -
Phac3g03840 431 Gene3D - 49 163 IPR015300 -
Phac3g03840 431 SUPERFAMILY DNA-binding pseudobarrel domain 65 161 IPR015300 -
Phac3g03840 431 CDD B3_DNA 68 159 IPR003340 GO:0003677
Phac3g03840 431 Pfam B3 DNA binding domain 70 160 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03840 Phac-Chr3 38240056 38244444 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03840 52 205 B3 DNA Binding Superfamily AT3G19184 41.026 1.90e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phac3g03840 B3 6.1e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03840 - - vra:106768002 744.962