Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03839 ATGGTGGTGAGTGATGAAAGGAACCGCGATCGTGCGAATAGGAGGGACGTGGTGGATCTTCCACAATATGATCAAGCTGTGACTGTGGCATATTACGGGGAGGAGTTGCATGGGGGCGTACCACTACCCCACTCCTCAAGAATCTCTCCTTTAAACATGGATAAACAAAACAAGGTGGTGGAGAATAAATACAAACGATTGAATAATAATCAGACCAAGCAAGCAACGCCTGCTGAGGCTCAGAAGTTTTCAAGTTCCATGAAGGCTGCAGTAGAAGGAACATCCTCTCGTGGTGAGGTCATGTCATCTGCAGTTCTTCAAGCAGAGGAGGTCCAATCAAATTTGAGACCAGAATTTCCTAGTTTTGTGAAGTCTTTAATTAGATCACATGTTGCTAGTTGTTTTGGGATGGGCCTTCCTGTGTCCTTCTGCAAAAGACACTTACCAGATAAGGATACAACAATCATTTTGGAAGATGAACATGGTAAAGAATACAATACAAAATTCATTGCCTGTAAGATGGTATTGAGTGCTGGATGGAGACAGTTTTCTGCTGAGCACAAATTGCAGGAAGGTGATGCGGTGGTCTTTCAATTAGTTGAACCAACCAAATTTAAGATTTATATAATAAGAGCTAATAATACGAGGGAACTAGACGGGGCCTTTCTGAATCTTGATAGTTGCAATAAACAAAAAATGGGAGGCAAAGATAACACAGATACTGATGTTGTGACATGCAATAGCTCAAAGAGAAAGCATGGCAAATCTGTCCCACTAGATATCCAAAAGAAAAAGAAGGCAAACTTGTCGAGATTGAGACCCAAGGCCGGGCCATCAGTAGAACAATCGGAAAATGATAGCGAGGAATCTCTTTCAGAAGTTGTGGAGGAGTTTAAAATACTTGAGTTTGAAGATATGAGAGGCTTTGAAAATTTTAGCATCATAGTTGAGGGAGTGTCAATAGATGTTGAATTTCCTACCGAAGTTAGAAACAAGTACTACAGGCTATGCTGCAGTCAGCATGCATTTCTTCATGAGAATCTCATCAAGGGCATGAACTATAAGCTGATTGCTGGAATTATATCTGAAACTGTCAACATTGCTGATGCCATAAGGGTTAGTGTGATATGCACCCCACGTTTTGAATTTGCTAACTGGGACAAAACATTGCTAGCCTTTGAGCATCTGGGCATGAATGTTGAGTTTCTAAGGATCCGATTACGCCGGCTTGTAAGCATTGCTTATGAGAAAAATGATGTCTCAGAGGCCAAAAAGTACTTGGCATATAGAAATGAGCCCAGTCGTGCAGACGATGAAATAAGGAACATGGAAGTCAAGCTTGAAGAATTGAAGGGAGCATGTAATGGTTTTGGTGCTTATCTTGGGAGTTTGAAGGGCAAAGCTGAAAACTATCAGATGAAGTTTCGAAGAGAAGTCGATGCTCCTTGGTGA 1452 0.4146 MVVSDERNRDRANRRDVVDLPQYDQAVTVAYYGEELHGGVPLPHSSRISPLNMDKQNKVVENKYKRLNNNQTKQATPAEAQKFSSSMKAAVEGTSSRGEVMSSAVLQAEEVQSNLRPEFPSFVKSLIRSHVASCFGMGLPVSFCKRHLPDKDTTIILEDEHGKEYNTKFIACKMVLSAGWRQFSAEHKLQEGDAVVFQLVEPTKFKIYIIRANNTRELDGAFLNLDSCNKQKMGGKDNTDTDVVTCNSSKRKHGKSVPLDIQKKKKANLSRLRPKAGPSVEQSENDSEESLSEVVEEFKILEFEDMRGFENFSIIVEGVSIDVEFPTEVRNKYYRLCCSQHAFLHENLIKGMNYKLIAGIISETVNIADAIRVSVICTPRFEFANWDKTLLAFEHLGMNVEFLRIRLRRLVSIAYEKNDVSEAKKYLAYRNEPSRADDEIRNMEVKLEELKGACNGFGAYLGSLKGKAENYQMKFRREVDAPW* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03839 483 SUPERFAMILY DNA-binding pseudobarrel domain 117 213 IPR015300 -
Phac3g03839 483 Gene3D - 101 215 IPR015300 -
Phac3g03839 483 MobiDBLite consensus disorder prediction 67 86 - -
Phac3g03839 483 CDD B3_DNA 120 211 IPR003340 GO:0003677
Phac3g03839 483 Pfam B3 DNA binding domain 122 212 IPR003340 GO:0003677
Phac3g03839 483 SMART B3_2 122 213 IPR003340 GO:0003677
Phac3g03839 483 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 61 215 IPR044837 -
Phac3g03839 483 ProSiteProfiles B3 DNA-binding domain profile. 122 213 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03839 Phac-Chr3 38240056 38244444 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03839 104 257 B3 DNA Binding Superfamily AT3G19184 41.026 4.40e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phac3g03839 B3 7.4e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03839 - - vra:106768002 828.935