Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03830 ATGTCCCAGCGATCAACGCCAGCGCCATTTTTGACGAAGACGTATATGTTGGTGGATGACCCTGCCACCGACGACGTTATTTCGTGGAGCGAATTGGGAAACACTTTTGTCGTTTGGAAACACGCCGATTTCGCTAAGGATTTGCTTCCCAAATACTTCAAACACAACAATTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGGTTCCGAAAGATCGTTCCCGACAAATGGGAATTCGCCAACGAGTGTTTCAAGCGAGGGCAAAAGGAGCTCCTTGCCGAGATCAAGCGGCGGAAGACAGTGCTGCAATCTCCGGCGACCGGAAAGTCAGGCGGAGGGAACATCTCGGCGTCCAACTCCGGCGGCGACGATATGGGGTCAACGTCGACGGGGTCGGTGGAGGGTGCAACGACGTCGCAGTGCGCGGATTTATCGGGCGAGAACGAAAAATTGAAGAAGGACAACGAGAAATTGAGCGGCGAGCTGGCGCGTGCGAAGAAGCAGTGCAACGAACTGGTGTCGTTTCTGAGGGAGTCACTGAACGTGTGTCCCGATGTGATCAACCGCATCATTCGGCAAGGAACGTGTGGGTCCAGCGACGATGCGGTGCGTTTTGAATGTATTCGTGATGATGACGACGAAAATGCGGTAGGTGAGTGTGGAGCCAAAGTCGATGATGAGAGAGGTGGAGAAAGTTTGAAACTGTTCGGTGTTTGGTTGAAGGGTGAAAATGGGAATGGAGAAGATAAAGTGAAGATTGGTAGTAACTGGCGCAAGAGAGGGCGCGATGACCCTATGGCCGGCACTGCGAAGGAGCTGAAAACCCTTGTGTAG 837 0.5269 MSQRSTPAPFLTKTYMLVDDPATDDVISWSELGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANECFKRGQKELLAEIKRRKTVLQSPATGKSGGGNISASNSGGDDMGSTSTGSVEGATTSQCADLSGENEKLKKDNEKLSGELARAKKQCNELVSFLRESLNVCPDVINRIIRQGTCGSSDDAVRFECIRDDDDENAVGECGAKVDDERGGESLKLFGVWLKGENGNGEDKVKIGSNWRKRGRDDPMAGTAKELKTLV* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03830 278 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac3g03830 278 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac3g03830 278 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac3g03830 278 Coils Coil 142 169 - -
Phac3g03830 278 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 193 IPR027725 -
Phac3g03830 278 MobiDBLite consensus disorder prediction 104 147 - -
Phac3g03830 278 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac3g03830 278 MobiDBLite consensus disorder prediction 257 278 - -
Phac3g03830 278 MobiDBLite consensus disorder prediction 104 146 - -
Phac3g03830 278 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac3g03830 278 Gene3D - 2 101 IPR036388 -
Phac3g03830 278 FunFam Heat stress transcription factor B-4 2 100 - -
Phac3g03830 278 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
Phac3g03830 278 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03830 Phac-Chr3 38166887 38170316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03830 2 244 HSF AT4G36990 55.020 9.97e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phac3g03830 HSF_DNA-bind 2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03830 K09419 - gmx:100801897 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g03830 3 38166887 38170316 Phac3g03830 3 38166887 38170316 ECH
Phac2g02358 2 25245036 25247552 Phac3g03830 3 38166887 38170316 PCT