Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03813 ATGTCATACGTCATATCCTTCGTTTCTTTTCCATCGGTTTCTCAAACTAGCCACCTCCATTCCCATTACCCACATTACATTAACAAACACAAACATAAACACCTGCCTCTGCAACCAACTCCCAATCCCCAACAGTCAAAAGAGAAAATTGCTAACGCTCCTTTCACCTTTTTCTCTTCTCTCCTACCTTCAACCAAAACATTACAATCTCTTCTTCCTCCTCTTCCACACACCACCAAATCTCCCTTCCCCTTCCTTCCTCCCTTCATCTCCATGCTTCGCTTCTGCACCTCCAAAACTGCACAACAAAATGCACTGCAAGATGGGATCTCCGCCTACAAGGCTTCTTCTGCTGCCAACGTCTCTTCTTCCTCGGTGGCACTTAATAATGAAACCGATGAGTACGACTGCGAGAGTGAGGAGGGTGAGGCGTTGGTAGATGAGGTTCCAATTCCACCGAAGTGTTTTCGTTCTGGGAGTTCATCCAAAAGAAGCAGAGCTGCGGAAGTTCATAACTTGTCTGAAAAGAGGAGGAGAAGTAAGATCAATGAGAAATTGAAAGCTTTGCAAAATCTAATTCCAAATTCTAACAAGACTGATAAGGCTTCAATGCTTGATGAAGCTATTGAATACCTTAAACAACTTCAGCTGCAAGTACAGATGCTGTCAATGAGAAATAGGTTGAGTTTGCATCCTATGTTCTTTCCAGAAGGTTTGCAACCCCCGCAATTGTCTCAGATGAGAATGGATCCAAGTGAAGAAAACAGATCTATCCCTTCAAACACTACTGCTACTCTGCCTATCCAACAAGAAAACCCCATGCCCTATTCATCCACTCTGCCTAACAAACAAATTGTGGCAGATCAGCCATCCATGTCCGCCGCATCATATTTATTCAACTCTGAAACTTCTTTTAGGCTGGAATCTCATATTCCTGAAAATATAAGATCATTTCAACTCAAAAGTTTTTCTGAGATGTGCAGAGAAGACATATTGCAGCTCCAACTTTTAAATGCAAACCATTCAGATACCAATCCATTAGGTTGTTCTCAAGGCACGTTGGCTACAGCATCAATTTCCTTTGATATGCAAAAATCTGCACTTAAAGACAACAGCTCTTTGGAAAACTGCATCCCTGGAAGTGATCAGTCTGGACTGGTGTTGAGAAATAGTGAGCCCAACATTATTCTGACCCAGCGGTTAATTGGGTGA 1212 0.4249 MSYVISFVSFPSVSQTSHLHSHYPHYINKHKHKHLPLQPTPNPQQSKEKIANAPFTFFSSLLPSTKTLQSLLPPLPHTTKSPFPFLPPFISMLRFCTSKTAQQNALQDGISAYKASSAANVSSSSVALNNETDEYDCESEEGEALVDEVPIPPKCFRSGSSSKRSRAAEVHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNRLSLHPMFFPEGLQPPQLSQMRMDPSEENRSIPSNTTATLPIQQENPMPYSSTLPNKQIVADQPSMSAASYLFNSETSFRLESHIPENIRSFQLKSFSEMCREDILQLQLLNANHSDTNPLGCSQGTLATASISFDMQKSALKDNSSLENCIPGSDQSGLVLRNSEPNIILTQRLIG* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03813 403 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 227 IPR036638 GO:0046983
Phac3g03813 403 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 66 325 IPR031066 -
Phac3g03813 403 Gene3D - 161 227 IPR036638 GO:0046983
Phac3g03813 403 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Phac3g03813 403 SMART finulus 172 221 IPR011598 GO:0046983
Phac3g03813 403 MobiDBLite consensus disorder prediction 156 178 - -
Phac3g03813 403 CDD bHLH_AtPIF_like 167 228 IPR047265 -
Phac3g03813 403 Pfam Helix-loop-helix DNA-binding domain 170 216 IPR011598 GO:0046983
Phac3g03813 403 FunFam Basic helix-loop-helix transcription factor 161 224 - -
Phac3g03813 403 Coils Coil 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03813 Phac-Chr3 37962155 37965883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03813 130 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 52.466 1.51e-47 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac3g03813 HLH 3.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03813 - - vun:114177198 481.87