Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03810 ATGAATCTCCCTCAGCAAGGTGCCAACAACAATGGTGCCAGAACTGATCCTCCACTTCAGGAAACCCCTAATGCTGTAGCACCGGAATCAAACATTTCCTCTTCAAGTCCCCTTGTTGGAACTCCTCCAAATCCTACAGAAGATGTAAACTTGTGTCTGAACTTTGGCATAAGCCGTCAGGGTGCAACAATATCTCCTGCTACGATTCCAAATTCCAATGATGCACGTAGCGAGCATGGAAGCAACTCAAACAGCGCCAACATATCAAGAAAAAGAAGCCTCCCTGGAAATGCCTCTCTACATATAGAAGAACCTAAAACACCTGATGCTGGGTCTCAGGTGAGAGCTACCCCCAATGTGATTCCACAGAATGCAGGAACAACTATTCCACCAACCAACACGAGAGCTGACTGGATGGATAATACCAATCATAGAAGAGGTTATGGTGCTCCACCTTTTATTCCAACACATTCCCTTCACTCTCCTCTCCAACCCTCACATTCCGTTCATCCTCTATCTTTTCACAGTACTTCATTCATGTCTAGTACTACCTTCAATGGAAACACCATGACCACCATGAATGCTACTCACTCAGTATCCTCCCCCTTTCCACACCCTGGAGTGGATATTATGCTCCCATTTTATGAACATGGAAACAACATGTTTGGCCCTGTTGTAACATCAATGGGTCATTTTCCAACTTATCGACCAAACTGGTCTTACATTGATAGTGGTCGAGATACTGCTAGAGCGGCTCTTTCTTTTATTCTCCCCTTCCAACCCCCGGAATCTGCACCAATGCAATTCCTACCTGGAATTGTGGGAAATGGTGGCATAGTTAGTAATGCTGGAGCAAATACATACAACCCTCTGAGTAATCATGCTAGCTCTTCAACTTGGGTTCCTCCACAGGGCTCACGAGGAATGTACCATCCTGCTGCAGAAAGTAATTCTGTCTCTTGGAACCACCATGGTTTTATGCAAATATCATCGTCTCCTATTCCACCCAGTGTCATTCATGAACCCGCTTTTCCGCTACCACAATTTCCTTCTGAGGAAACGAGAAGAAGGCTTCCAAATGAGGTTCAATCTATCCTTGATTCTTTACGCTATGGTCAAGCTCTAAGGTTCGAGGAATTGATGATCCTTGACTACTCACTTGTGTTACGTGCGTTTGAGATAGAGCACCCTGAACTATTTGAGACCTCGCCATCCTCGGGACTGAGTCTGGAAACGATAGCACAGTACATGGATAATGAGACTTTCTTGGTTGTTGATGGAGATGCTTCAGAAGAAAATAAAGAAAAATGCCCCATCTGTCTGGAAGAATTTAAGAACGGAGAGGTAATCGGGAAGCTGCATTCATGCGTGCACAAGTTTCACCTTGATTGCATCAAAACTTGGCTCAACCGCAAGAACCTTTGCCCCGTCTGCAGAAGAACTGCGTTGGAAACGCAGAATGACCAAAATGTTGGTGGTAGAGCTGGAGCTGGAGCTGTAGTTCGCGGTGAAGGTGGCAGAGAATAG 1527 0.4538 MNLPQQGANNNGARTDPPLQETPNAVAPESNISSSSPLVGTPPNPTEDVNLCLNFGISRQGATISPATIPNSNDARSEHGSNSNSANISRKRSLPGNASLHIEEPKTPDAGSQVRATPNVIPQNAGTTIPPTNTRADWMDNTNHRRGYGAPPFIPTHSLHSPLQPSHSVHPLSFHSTSFMSSTTFNGNTMTTMNATHSVSSPFPHPGVDIMLPFYEHGNNMFGPVVTSMGHFPTYRPNWSYIDSGRDTARAALSFILPFQPPESAPMQFLPGIVGNGGIVSNAGANTYNPLSNHASSSTWVPPQGSRGMYHPAAESNSVSWNHHGFMQISSSPIPPSVIHEPAFPLPQFPSEETRRRLPNEVQSILDSLRYGQALRFEELMILDYSLVLRAFEIEHPELFETSPSSGLSLETIAQYMDNETFLVVDGDASEENKEKCPICLEEFKNGEVIGKLHSCVHKFHLDCIKTWLNRKNLCPVCRRTALETQNDQNVGGRAGAGAVVRGEGGRE* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03810 508 SMART ring_2 437 478 IPR001841 -
Phac3g03810 508 MobiDBLite consensus disorder prediction 112 136 - -
Phac3g03810 508 MobiDBLite consensus disorder prediction 64 136 - -
Phac3g03810 508 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 49 483 IPR045191 GO:0061630
Phac3g03810 508 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 425 497 IPR013083 -
Phac3g03810 508 MobiDBLite consensus disorder prediction 1 45 - -
Phac3g03810 508 MobiDBLite consensus disorder prediction 64 94 - -
Phac3g03810 508 Pfam Ring finger domain 436 479 IPR001841 -
Phac3g03810 508 ProSiteProfiles Zinc finger RING-type profile. 437 479 IPR001841 -
Phac3g03810 508 SUPERFAMILY RING/U-box 428 490 - -
Phac3g03810 508 CDD RING-H2_RNF24-like 435 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03810 Phac-Chr3 37952906 37958453 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03810 355 485 C3H Transcription Factor Family AT2G15530 32.237 6.26e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03810 - K10635 pvu:PHAVU_003G242800g 416.772