Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03808 ATGAAAGTAAGAAATATCAACGTAAGAAAGAGAATTTCTACAATAGTTTGCACGTCAACACTGATTTTTGTGTTTATAAATGGAAGAGGTCTCAGCCTTCACTCTTCACTTCTTTTGCTGCTCAGTGCTCTTGTTTCTACAGATCCACTGGGTGTAGTGACTTTCACAAGTTTAGGAACAATGAATCCTCAAGGTGACGGCTCAGTTGGAGAAGCTAACGAAAACAACCCAAATGAGGAAGGGCTCCTTGAAGGGTTTCCTCAGACAGAAGTGAATCTCCTTCAACAAGGTTCCAACAACGATTTTATCAGCACTGTTCCTCTTCAGGAAGCTCCTAATGTCCAGCCCGTACTGAATCTCCCTCAACAAGCTGACAACAACAATATTGGTGCCGGCACTGATGTTCCTCTTCATCAAGCCCTGAATGCTCTACCACCAGAATCTAACATTTCCTCTTCAAGCTTCCATGTCGGAAGCAGCTCGAACACCTTGAACATTCCAAGAAAAAGAACCTTCAGTACTGGACAATTTTATGTGGGTGAAAGTTCAAACATGGGTCAACAAGAGACAGAAGAGGTTGGAGATAACAACAATGTGAGCCCACATAATGCAGAAACACCTATTCCACCACCCAATACGGGTGCTAACAGAAACGAGAATACTAATATTGGGAGAAGAGCTTCTGATGCTCCGGTATCAAGCCAAGCAAGTCTGTATTTTAACGGAGCTTCAACACATCCCGTTCAGCAACCTCTCCATCGCCTGTATTCTGGTCAGCCTATATCTGTTCAGGGTGGTTCATTAATGCCCAGTGGTAGCTCCACTGTTCACAACATAACCGTGAGGACTACTCCTCCCACCCGCTGTCCACACACAAGAGTGGATATTATGATTCCATTTTTTGAACATGGTAGCTCTTCAACTTCGGCTCCGCGACAGGGCCCACGAGGAATGAACCAGTCTGCTGCACTAAGCAGTTCTGTCACTCAGAACCATCAGAGTCCTCAGCAAACACCAGCATCTGCAATTCCACCCAATATTTTTCCTTCTGAAATCAGAAGTAGGCTTCCACCTGAGGTACGCTCCATGCTTTTTCCTTCTAAGGTTCAAACTATCTTGGATTCTCTACGCAATGGTGGCGGTCTAATCTTTGAGATAGAGAATGCTGAACCGTCTACGGGACTAAGTCTCGAAACGATCATGCACCACATGGAACGTGAGACTTTTCTGGATGCTGTTGGAGATGGTCCAGAAGAGTATGAACAAAGGTGCACCATCTGTTTGGAAGAATTTGACAACGAATCGGATCTCGGGAAGCTGGAGCTATGTGACCACAAGTTTCACTTTGATTGCATCAAACAGTGGCTCATGCAGAAGAACCTTTGCCCCGTGTGCAGAAGAGTTGCGTTGGAAATTCATCCTAATGCCCCAAATGAATATGGTTATTTCTTCCTACCAAGTGTGCAAAGCTGTCAACTTTTGCTGCTCAGTGTGCCCTTTGTTTCACCAGATCTAGTGGGTGTAGTGACTCTACCTTTAAGTCTTCGGCCATCAGAAGTGAATTCAGCAACGATGAACCCTCATGGTGGCTCAACTGGAGAAGCTAATGCAAACAACCAAAATTATTGGAATCCTCACCTTTCCAGTGAAACACAGGAGAGGCTGCTTCCCTTATTTCCCCTCTTTGCTACTGATCAGGAAGGGTTTCCTCAGCCAGAAATGAATCTCCCTCAACAAGGTGCCAACAACAATGGTACCAGAACTGATGTTCCACTTCAGGAAACCCCTAATGTTGTAGCACCGGAATCAAACATTTCCTCTTCAAGCTTCCTTGCAACAACTCCTCCAAATCCTTTGGAAAATCTAGACTTGTGTCTGAACTTTAGCTTAAGCCGTACAACAGTATCTTCTGCTGTGATTCCAAATTCGAATGTTGCATGTAGCGTGCATGGAAGCAACTCAAACTCAGCGAACATTCCGAGAAAAAGAGGTCTCCCTGATCATGCTTCTCGAGAATTTCATCAGGGTGAAAGTTCAAACATGCGTCAAGAGACCGGAGAGATCAAAAGACTTGCTACCGAGTCTCACATGAGAGGTAACAACAATGTGAACCCGTCACCACCACCACTTCCTCTGCTGCAAGAGTATCAATTCCTCCCTCCCCGCCATCTTAATCCAAACAATGCAAGGACACCTTTTGCTCCACCCAACGGGATGACTAACACTAATCAAAGAAGAGGGTCTTATGGTCCGATACCAAGCCAAGGGAATTTTCATTTCAACGGAGCCTCAACACATTCCCAACTGTGTCCTCTCCAACCCTCACATTCCGTTCGGCCTCTATCTTTCCACAGTACTTCATTCATGTCCAGTTCTGCCTCCAGCGTTAACAACCTAACCGTGCGGAATGCTACTCACTCAATATCCTCCCCGTGTCCTCACGACAGAACTGATTTTATGATTCCATTTTATGAACATGGAAATAACATGTTTGGTCCTGCAGTTACATCCGTGGGTAATTTTCCCACTTATCGACCAAACAGGTCTTACGTTGATAGTGAACAAGATACTGCTAGAAGGGCTCTTTCTTCTGTTCTCCCCCATCAGTTTGAACCCTCTGAATCGGAACCACTGCAATTACTACCTCGAAATGTGGGCAATGGTGGCAGAGTTAGTAATGCTCGAGCGAACCACCCTCTCAGTGATCATGCTAGCTCTTCAACATGGGTTCCTCCTCTGGGCTCACGAGGAATGCCCCATTATGCTGCAGCAGGTAGTTCTAGCACTCAGAACCTTCATAGTCTTAGGCCAGTACCACAATTTCCTTCTCTTGAAGTGCTAAGAGGGCTTCCAACTGAGTTTCGATCTCTCCTGCATTCTTCTCTTAGAGGTGGTCGTGGTCTAATGATCGAGATAACGCCGCAAGCATCCAGGGGACTGAGTCTGGAAACGATAATGCAGTTCATGGAGCGTGAAATTTTCTTGGTTGTTGATGGAAATGATCCAAAAGAAAATAAAGAAAAATGCCCCGTCTGTCTGGAAGAATTTTGCAACGGAGAGTATATTGGGAAGCTGCATTCATGTGTGCACAAGTTTCACTTTGATTGCATTAAACAGTGGCTCATGCAGAGGAATCTTTGCCCCGTCTGCAGAAGAACTGCGTTGGAAATGCGTAATGACCAAAGTGTAGTATACATATTTGAATAA 3207 0.4515 MKVRNINVRKRISTIVCTSTLIFVFINGRGLSLHSSLLLLLSALVSTDPLGVVTFTSLGTMNPQGDGSVGEANENNPNEEGLLEGFPQTEVNLLQQGSNNDFISTVPLQEAPNVQPVLNLPQQADNNNIGAGTDVPLHQALNALPPESNISSSSFHVGSSSNTLNIPRKRTFSTGQFYVGESSNMGQQETEEVGDNNNVSPHNAETPIPPPNTGANRNENTNIGRRASDAPVSSQASLYFNGASTHPVQQPLHRLYSGQPISVQGGSLMPSGSSTVHNITVRTTPPTRCPHTRVDIMIPFFEHGSSSTSAPRQGPRGMNQSAALSSSVTQNHQSPQQTPASAIPPNIFPSEIRSRLPPEVRSMLFPSKVQTILDSLRNGGGLIFEIENAEPSTGLSLETIMHHMERETFLDAVGDGPEEYEQRCTICLEEFDNESDLGKLELCDHKFHFDCIKQWLMQKNLCPVCRRVALEIHPNAPNEYGYFFLPSVQSCQLLLLSVPFVSPDLVGVVTLPLSLRPSEVNSATMNPHGGSTGEANANNQNYWNPHLSSETQERLLPLFPLFATDQEGFPQPEMNLPQQGANNNGTRTDVPLQETPNVVAPESNISSSSFLATTPPNPLENLDLCLNFSLSRTTVSSAVIPNSNVACSVHGSNSNSANIPRKRGLPDHASREFHQGESSNMRQETGEIKRLATESHMRGNNNVNPSPPPLPLLQEYQFLPPRHLNPNNARTPFAPPNGMTNTNQRRGSYGPIPSQGNFHFNGASTHSQLCPLQPSHSVRPLSFHSTSFMSSSASSVNNLTVRNATHSISSPCPHDRTDFMIPFYEHGNNMFGPAVTSVGNFPTYRPNRSYVDSEQDTARRALSSVLPHQFEPSESEPLQLLPRNVGNGGRVSNARANHPLSDHASSSTWVPPLGSRGMPHYAAAGSSSTQNLHSLRPVPQFPSLEVLRGLPTEFRSLLHSSLRGGRGLMIEITPQASRGLSLETIMQFMEREIFLVVDGNDPKENKEKCPVCLEEFCNGEYIGKLHSCVHKFHFDCIKQWLMQRNLCPVCRRTALEMRNDQSVVYIFE* 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03808 1068 MobiDBLite consensus disorder prediction 185 218 - -
Phac3g03808 1068 MobiDBLite consensus disorder prediction 303 344 - -
Phac3g03808 1068 MobiDBLite consensus disorder prediction 898 912 - -
Phac3g03808 1068 ProSiteProfiles Zinc finger RING-type profile. 424 466 IPR001841 -
Phac3g03808 1068 Pfam Ring finger domain 1008 1051 IPR001841 -
Phac3g03808 1068 Pfam Ring finger domain 423 466 IPR001841 -
Phac3g03808 1068 MobiDBLite consensus disorder prediction 303 346 - -
Phac3g03808 1068 SMART ring_2 1009 1050 IPR001841 -
Phac3g03808 1068 SMART ring_2 424 465 IPR001841 -
Phac3g03808 1068 ProSiteProfiles Zinc finger RING-type profile. 1009 1051 IPR001841 -
Phac3g03808 1068 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 115 470 IPR045191 GO:0061630
Phac3g03808 1068 SUPERFAMILY RING/U-box 1001 1061 - -
Phac3g03808 1068 SUPERFAMILY RING/U-box 417 478 - -
Phac3g03808 1068 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 973 1055 IPR013083 -
Phac3g03808 1068 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 470 IPR013083 -
Phac3g03808 1068 MobiDBLite consensus disorder prediction 868 912 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03808 Phac-Chr3 37931360 37948668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03808 392 471 C3H Transcription Factor Family AT2G15530 43.902 1.73e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03808 - K10635 vra:111241966 608.986