LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac3g03770	ATGGAAACGCTTCCTTACACGATCCCTTCTACTAAATTACACTCCCTTCGTATTTACACCCGTGCCACACCAATTCCATTTTCCACCCTCCCTTTTCGCCCTCCCGGAATTTCAATCAAACCTTTGTATTCCCCCAAATTTCTCATTCTCCCTCCTCGCAGGTATCGCTGCGTCGCTGACTCCTCCAATAATCACCACCACAACCACCACCACCACCATCAAGACCATCAGGGTCACCACCACCATCAAGACCATCAAGGTCACCACCATCACCACCACCACCATCATCACCACTCGCACGGCATCGATGGTGCTAATCTCACTGGGCCCCAAAAGGCGGTTATCGCGTTCGCCAAAGCCACCAGATGGATGGACTTGGCAGATATCCTTAGAGAGCACTTGCATCTATGCTGTTTCTCCACCGTTTTATTTGTGGCTGCTGCCATTTGCCCTCATACCTTGCCCAAGCCACTCGTCAGGCCTTTTCAAAACTCTCTCATTTTCATCGCATTCCCTTTGGTTGGGGTTTCTGCCTCACTTGATGCTCTTATTGAGATCAGTAGTGGGAAGGTGAACATCCATGTGTTAATGGCAATGGCAGCCTTTGCATCAATATTTATGGGAAACTCTTTGGAAGGAGGCTTGCTTCTTGCCATGTTTAATCTGGCGCATATAGCCGAAGAGCATTTCACCAGCCGATCGATGGTTGATGTCAGAGAGTTGAAAGAAAATAATCCAGATTTTGCCCTTGTTCTGGATACCAAGGATGATAAACTCCCCAATACATTTGACTTGGCATACAAGAGGATTCCCGTGCATGATGTAACTGTAGGATCATATATTCTGGTTGGTGCCGGCGAGTCTGTACCAGTGGATTGTGAAGTATTCCAAGGCAATGCCACAATTACCATCGAGCACTTGACAGGGGAAGTGAAACCTTTGGAAGCCAAAGTTGGAGATAGAGTTCCTGGCGGTGCAAGGAACTTAGATGGGAGGATAATTGTGAAGGTAACAAAAACTTGGAAGGAATCAACTCTCAGCAAAATTGTTCAGTTGACTGAAGAAGCACAGTCAAATAAACCTAAACTTCAAAGGTGGCTGGATGAATTTGGTGAACGATATAGCCAAGTTGTTGTGGTGCTATCCATTGCAATTGCTGTTATTGGACCACTTCTATTTAAGTGGCCGTTCATTAGTACATCTGCTTGCAGAGGTTCAATTTACAGAGCGTTAGGGCTTATGGTGGCAGCATCACCTTGTGCCTTGGCTGTGGCCCCATTGGCGTATGCTATAGCAATCAGTTCCTGTGCCAAAAAGGGGATATTACTCAAAGGTGGGCATGTTCTCGATGCTCTAGCTTCTTGTCGTACTATTGCATTTGACAAAACAGGGACATTGACAACTGGTGGACTTGTATTCAAGGCAATTGAGCCCATTTACGGTCACCATGTTAGAAACAATGTATCAAAATTTGCTTCCTGTTGCATTCCCACCTGTGAAAAAGAAGCTCTTGCGGTTGCTGCAGCTATGGAAAAGGGTACTACACACCCTATTGGAAGGGCTGTAGTTGACCATAGTGAAGGCAAAGACCTCCCATCTATTTCCGTTGAAAGTTTTGAATACTTTCCTGGTAGAGGCCTTACTGCTACTGTTAACAACATTGAGTCAGGAAGGGGAAGTGCCAAACTATTAAAAGCATCACTTGGGTCTATAGATTTCATCACTTCTTTTTGTCAATCTGAAGATGAGTCAGAAAAGATCAAGGAAGCGGTTAATACATCTTCTTATGGAAGTGAATATGTTCATGCTGCCCTTTCAGTTAATCAGAAGGTAACATTGATTCATCTAGAGGATAGGCCTCGTCCTGGGGTTTTTAATGTTATTCAAGAATTGCAAGATGAAGCAAAGTTTCGTGTGATGATGTTAACCGGAGATCATGAGTCTAGTGCAAGGAGAGTTGCAAGTGCTGTGGGCATCAATGAGTTTCATTGCAACCTGAAGCCTGAAGATAAGCTGAGTCACGTGAAGGATACCTCAAGAGATATGGCTTCAACTATGCAAGTAATTTGTGCAGAACTGAAGCTTAAAATATTACCTTTACATGCTTCACTTTCAAGTCTCGTTTTGTGGTACCTTTGTTGA	2142	0.4444	METLPYTIPSTKLHSLRIYTRATPIPFSTLPFRPPGISIKPLYSPKFLILPPRRYRCVADSSNNHHHNHHHHHQDHQGHHHHQDHQGHHHHHHHHHHHSHGIDGANLTGPQKAVIAFAKATRWMDLADILREHLHLCCFSTVLFVAAAICPHTLPKPLVRPFQNSLIFIAFPLVGVSASLDALIEISSGKVNIHVLMAMAAFASIFMGNSLEGGLLLAMFNLAHIAEEHFTSRSMVDVRELKENNPDFALVLDTKDDKLPNTFDLAYKRIPVHDVTVGSYILVGAGESVPVDCEVFQGNATITIEHLTGEVKPLEAKVGDRVPGGARNLDGRIIVKVTKTWKESTLSKIVQLTEEAQSNKPKLQRWLDEFGERYSQVVVVLSIAIAVIGPLLFKWPFISTSACRGSIYRALGLMVAASPCALAVAPLAYAIAISSCAKKGILLKGGHVLDALASCRTIAFDKTGTLTTGGLVFKAIEPIYGHHVRNNVSKFASCCIPTCEKEALAVAAAMEKGTTHPIGRAVVDHSEGKDLPSISVESFEYFPGRGLTATVNNIESGRGSAKLLKASLGSIDFITSFCQSEDESEKIKEAVNTSSYGSEYVHAALSVNQKVTLIHLEDRPRPGVFNVIQELQDEAKFRVMMLTGDHESSARRVASAVGINEFHCNLKPEDKLSHVKDTSRDMASTMQVICAELKLKILPLHASLSSLVLWYLC*	714

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac3g03770	713	PANTHER	PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1	60	683	-	-
	Phac3g03770	713	SUPERFAMILY	Calcium ATPase, transmembrane domain M	195	498	IPR023298	-
	Phac3g03770	713	NCBIfam	HAD-IC family P-type ATPase	266	493	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Phac3g03770	713	SUPERFAMILY	Calcium ATPase, transduction domain A	267	352	IPR008250	-
	Phac3g03770	713	Gene3D	-	470	620	IPR023299	GO:0000166
	Phac3g03770	713	SUPERFAMILY	HAD-like	447	680	IPR036412	-
	Phac3g03770	713	MobiDBLite	consensus disorder prediction	65	100	-	-
	Phac3g03770	713	Pfam	haloacid dehalogenase-like hydrolase	456	676	-	-
	Phac3g03770	713	Gene3D	-	452	681	IPR023214	-
	Phac3g03770	713	MobiDBLite	consensus disorder prediction	59	104	-	-
	Phac3g03770	713	ProSitePatterns	E1-E2 ATPases phosphorylation site.	461	467	IPR018303	-
	Phac3g03770	713	Gene3D	-	232	357	-	-
	Phac3g03770	713	Pfam	E1-E2 ATPase	267	439	-	-
	Phac3g03770	713	NCBIfam	heavy metal translocating P-type ATPase	193	681	IPR027256	GO:0006812\|GO:0016020\|GO:0019829

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac3g03770	Phac-Chr3	37512575	37528520	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac3g03770	110	689	Primary Pumps ATPases	AT4G37270	73.966	0.0	864

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac3g03770	K01534		-	gmx:100776309	1143.64