Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03755 ATGGCTTCAATCTCCGCCGCCGAACTCAATTTTCTAGTTTTTCGTTACCTTCAAGAATCAGGTTTCACGCATGCTGCTTTTACTTTTGGTTATGAAGCTGGTATAAACAAATGCTCCATTGATGGAAATTTGGTGCCACAAGGTGCTCTTGTTACATTTGTTCAAAAGGGTCTACAGTACTTTGAGATGGAAGCCAACTTGAGTAATTGTGATGCAGACCTGGAAGAAGATTTTTCATTCTTACAACCTTTGGATATTATCACAAAAGATGTGCATGAACTTAGGCAAATAATAAGTGAAAGAAGGAAAAAACTACAGAAGGAAAGAAAGAAAGAAATTGAAAAGGAGCATGAAGGAGAACGTGTACGGGCAAGAGAAAAGGAAAGACGTGAAAGGGAGAAGGAAGTTGAAAGAGATAAACGTGAAAGGGAGAAAGAAGTTGAAAGAGATAGACGTGAAAGGGAGAAAGAAATTGAAAAGGAGAGACGTGAAAGGGAGAAAGAAGTTGAAAAGGAAAGGCGTGAAAGGGAGAAAGAAGTTGAAAAGGAAAGACGTGAAAGAGAGAAAGAACTTGAAAAGGATAGGGAGAAGGTAGAAACTGATAAAGAACGAGAACAACAGCATGGAGATCAGAATGTTAAAGACATGGTCATAGATCATGAAGATAGGATCCCTGTAAAGCATGAAGAGAATGGAGCAGTTGGAGGGCCAGAACCAATGGACATTTCTACAACATCAACATCTCAGCTATGTGAAATTCCTAGTTCATGTGTGACAATTTTGGAAGGTCATACATCAGAGGTGTGCGCTTGTGCATGGAGTCCTACAGGATCTCTTCTTGCATCAGGATCTGGGGATTCAACAGCTCGTATTTGGACAATAGCAGAAGGGAGATGTAAGCCTGGTTCACATAATGGCCCTTTGAGCGTGTTGGTGTTGAAGCATGTTAGGGGTAAAACAAATGAAAAAAGTAAAGATGTTACTACACTTGACTGGAATGGGGAGGGGACACTTCTTGCAACTGGTTCATATGATGGGCAAGCAAGAATTTGGACCACTAATGGTGAACTGAAGAGTACATTAAGCAAACACAAGGGACCAATATTCTCCCTTAAGTGGAATAAGAAAGGCGATTATCTCCTCACTGGAAGTTGTGATCAAACTGCAATTGTGTGGGATGTGAAAGCAGAGGAATGGAAACAACAATTTGAATTTCATTCAGGTCCCACACTTGATGTTGATTGGCGCAACAATGTGTCTTTTGCCACTAGTTCCACAGACAATATGATATATGTTTGCAAAATTGGTGAAACCCGCCCTATAAAGACTTTTGCTGGACATCAGGTCTTTTTGGATTGCCATCACTCCATGCATGGTTTGGGCATTTTTGGATTGTCATCCAACACTGTAGAATGA 1416 0.4054 MASISAAELNFLVFRYLQESGFTHAAFTFGYEAGINKCSIDGNLVPQGALVTFVQKGLQYFEMEANLSNCDADLEEDFSFLQPLDIITKDVHELRQIISERRKKLQKERKKEIEKEHEGERVRAREKERREREKEVERDKREREKEVERDRREREKEIEKERREREKEVEKERREREKEVEKERREREKELEKDREKVETDKEREQQHGDQNVKDMVIDHEDRIPVKHEENGAVGGPEPMDISTTSTSQLCEIPSSCVTILEGHTSEVCACAWSPTGSLLASGSGDSTARIWTIAEGRCKPGSHNGPLSVLVLKHVRGKTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWTTNGELKSTLSKHKGPIFSLKWNKKGDYLLTGSCDQTAIVWDVKAEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGETRPIKTFAGHQVFLDCHHSMHGLGIFGLSSNTVE* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03755 471 ProSitePatterns Trp-Asp (WD) repeats signature. 380 394 IPR019775 -
Phac3g03755 471 SMART Lish 5 37 IPR006594 GO:0005515
Phac3g03755 471 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 351 IPR001680 GO:0005515
Phac3g03755 471 SMART WD40_4 309 352 IPR001680 GO:0005515
Phac3g03755 471 SMART WD40_4 254 293 IPR001680 GO:0005515
Phac3g03755 471 SMART WD40_4 354 393 IPR001680 GO:0005515
Phac3g03755 471 SMART WD40_4 396 434 IPR001680 GO:0005515
Phac3g03755 471 Gene3D - 2 91 - -
Phac3g03755 471 Gene3D - 249 455 IPR015943 GO:0005515
Phac3g03755 471 Pfam WD domain, G-beta repeat 256 292 IPR001680 GO:0005515
Phac3g03755 471 PRINTS G protein beta WD-40 repeat signature 339 353 IPR020472 -
Phac3g03755 471 PRINTS G protein beta WD-40 repeat signature 380 394 IPR020472 -
Phac3g03755 471 PRINTS G protein beta WD-40 repeat signature 280 294 IPR020472 -
Phac3g03755 471 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 361 395 - -
Phac3g03755 471 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Phac3g03755 471 SUPERFAMILY WD40 repeat-like 256 448 IPR036322 GO:0005515
Phac3g03755 471 Coils Coil 95 208 - -
Phac3g03755 471 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 298 IPR001680 GO:0005515
Phac3g03755 471 MobiDBLite consensus disorder prediction 108 211 - -
Phac3g03755 471 Pfam Anaphase-promoting complex subunit 4 WD40 domain 319 375 IPR024977 -
Phac3g03755 471 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 320 351 - -
Phac3g03755 471 FunFam F-box-like/WD repeat-containing protein TBL1XR1 2 93 - -
Phac3g03755 471 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 298 - -
Phac3g03755 471 Pfam LisH 8 33 IPR006594 GO:0005515
Phac3g03755 471 ProSiteProfiles Trp-Asp (WD) repeats profile. 361 402 IPR001680 GO:0005515
Phac3g03755 471 PANTHER WD40 REPEAT PROTEIN 4 448 IPR045183 GO:0003714|GO:0016575
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03755 Phac-Chr3 37394322 37405360 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03755 325 430 Eukaryotic Initiation Factors Gene Family AT2G46280 33.645 1.84e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03755 K04508 - gmx:100810406 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g03755 3 37394322 37405360 Phac3g03755 3 37394322 37405360 ECH
Phac2g00657 2 3688540 3697948 Phac3g03755 3 37394322 37405360 PCT