LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac3g03750	ATGTCTGGGAACCCGCAAGAGCAGCCACTGTTGTCGGACTCCTTTCAGGAAGAAGAGGAGCCGCAAGAAACAGCCTACGAATCCTCGGAGAAGATCGTGGTGGTGGGAATCGACGAGTCTGATAGCGAGGAGAATTGGGGGAGAGTGCCTCCTTTCTCCTGGAAGAAGCTATGGCTCTTTACTGGGCCGGGCTTTCTCATGAGCATAGCGTTTCTGGACCCGGGCAACCTCGAGGGGGACCTTCAGGCCGGTGCTATTGCCGGCTACTCCCTGCTGTGGCTTTTGATGTGGGCCACGGCCATGGGCCTCTTGATCCAGCTCCTCTCCGCCCGCCTCGGCGTCGCCACCGGGAAGCACCTCGCCGAGCTCTGCAGGGAGGAGTACCCTGCGTGGGCCCGGATAGTGCTTTGGGTCATGGCCGAACTCGCTCTCATTGGCTCCGATATTCAGGAGGTTATTGGAAGCGCTATTGCTATCAGAATTCTCAGTCGTGGGGTTGTGCCCCTTTGGGCTGGAGTCGTCATCACTGCTCTTGATTGTTTTATTTTTCTCTTTCTAGAGAACTATGGTGTGAGGACATTAGAAGCTTTTTTTGCTGTTCTCATTGGTTTGATGGCAATGTCGTTCGCGTGGATGTTTGGTGAAGCAAAGCCAAGTGGCAAGGAACTGCTTCTTGGCATTTTGATTCCAAAACTCAGCTCCAGAACTATACAACAGGCTGTTGGAGTTGTGGGGTGCCTTATCATGCCTCACAATGTGTTCTTGCACTCTGCTCTTGTTCAGTCAAGGCAGGTTGACCGCAGCAAGAAAGGCCGGGTTCATGAAGCTATTAATTACTACTCTATAGAGTCCACCCTTGCCCTTGTAGTCTCCTTTATCATAAATATATTTGTCACAACAGTGTTTGCTAAGGGGTTTTATGGTTCTGAACTTGCAAACAGCATCGGTCTTGTAAATGCAGGACAGTATCTTGAGGAGACATATGGGGGTGGTCTGTTTCCAATTTTATATATATGGGGTATTGGGCTATTAGCAGCAGGTCAAAGTAGCACTATTACTGGTACTTATGCTGGACAATTCATCATGGGAGGTTTTCTAAATTTAAGATTAAAGAAGTGGACAAGGGCGTTGATTACCCGAAGTTGTGCAATAATCCCAACCATGATAGTTGCTCTTTTATTTGATAGTACAGAGGAATCGTTAGATGTTCTGAATGGGTGGCTCAATGTTCTTCAGTCAGTTCAAATCCCCTTTGCACTCATTCCCTTGCTTTATCTGGTGTCAAAGGAGCAGATAATGGGCACTTTCAAAATTGGCTCTGTTCTCAAGATTACATCATGGCTTGTGGCTGCTCTGGTGATAGTGATTAATGGCTATCTTTTGACGGAATTCTTTTCCTCCGAAGTTAATGGTCTCTTGTTTGGCGCTGTAGTGGGTATAATAACTGCTGCGTATGTTGCATTCGTACTATACCTTATCTGGAGGGCCATTACCTTTTTACCTTGGCAAAGCATAACACGAGTAAAGACAGTTGTTCATTCAGAGAGTTAG	1551	0.4745	MSGNPQEQPLLSDSFQEEEEPQETAYESSEKIVVVGIDESDSEENWGRVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGKHLAELCREEYPAWARIVLWVMAELALIGSDIQEVIGSAIAIRILSRGVVPLWAGVVITALDCFIFLFLENYGVRTLEAFFAVLIGLMAMSFAWMFGEAKPSGKELLLGILIPKLSSRTIQQAVGVVGCLIMPHNVFLHSALVQSRQVDRSKKGRVHEAINYYSIESTLALVVSFIINIFVTTVFAKGFYGSELANSIGLVNAGQYLEETYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWTRALITRSCAIIPTMIVALLFDSTEESLDVLNGWLNVLQSVQIPFALIPLLYLVSKEQIMGTFKIGSVLKITSWLVAALVIVINGYLLTEFFSSEVNGLLFGAVVGIITAAYVAFVLYLIWRAITFLPWQSITRVKTVVHSES*	517

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac3g03750	516	PRINTS	Natural resistance-associated macrophage protein signature	240	263	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Phac3g03750	516	PRINTS	Natural resistance-associated macrophage protein signature	136	162	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Phac3g03750	516	PRINTS	Natural resistance-associated macrophage protein signature	191	212	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Phac3g03750	516	PRINTS	Natural resistance-associated macrophage protein signature	347	366	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Phac3g03750	516	PRINTS	Natural resistance-associated macrophage protein signature	375	392	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Phac3g03750	516	PRINTS	Natural resistance-associated macrophage protein signature	409	428	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Phac3g03750	516	PRINTS	Natural resistance-associated macrophage protein signature	166	185	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Phac3g03750	516	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	42	495	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Phac3g03750	516	NCBIfam	Nramp family divalent metal transporter	62	431	-	-
	Phac3g03750	516	NCBIfam	metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	55	433	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac3g03750	Phac-Chr3	37320576	37324705	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac3g03750	31	502	Inorganic Solute Cotransporters	AT2G23150	79.368	0.0	774

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac3g03750	K21398		-	gmx:547711	939.873

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