Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03690 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCTGCGCTGAAAGCTGGAGTAGTCAAACATGGGGCAGGAAAATGGCGCACCATACTTACAGATCCTGAATTCAGTGCTATTTTGCGCATGCGTTCAAATGTAGATCTTAAGGATAAATGGAGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAGGCAAAACTTGCTCTTAAGAGGAACCTACCTGCCCCCAAAATTGACAATAACCATATGGCCTTAAGTACTGTAGTTCGACATGATGAAGTTCTTGATACTAAGCCTTTAGCAGTTTCTGGTGGACCATTGCGATCTCCTAATTTGAAAGAACAAATATCGAGGTTGCAGAATATCCAGTTGGTGGATAATCATATATTGGAGGCCATTGTCAACATGAAGGAGCAAAAGGGTTCTGACAAGGGTGCCATCATTTCTTACATAGAGGAAAAATATCGGTCTCCACCAAATATCAGTAAATTACTGTCAACCAAACTGAAGAATATGGTAGCAAGTGGCAAAATAATCAAGGAGAAGCATAAGTACAGGATTGCATCAAGTTCAGTGGTCTCTGATAAAAGAAGATGCTCATCATTGGAGGGGAGGTCCAAAGATCCTTCAGAAGCAAATAGGAATGATGATGTCAACATCCTTTCAAAATCCCAAATTGATGAAGAGATATCAAAAGTTAAGGGCTTGACAGCTAAAGAGGCAGCTGCTGCTGCTGCAAAAGCAGTGGCAGAGGCAGAGGCTGCAATTGCACAGGCTGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAAGCTGAGGCTGCTCAAGTGTTTGCAAAAGCAGCAATGAAGGCACTAAAATGCAAAATGCTTCATATTTGGTAG 897 0.4314 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPKIDNNHMALSTVVRHDEVLDTKPLAVSGGPLRSPNLKEQISRLQNIQLVDNHILEAIVNMKEQKGSDKGAIISYIEEKYRSPPNISKLLSTKLKNMVASGKIIKEKHKYRIASSSVVSDKRRCSSLEGRSKDPSEANRNDDVNILSKSQIDEEISKVKGLTAKEAAAAAAKAVAEAEAAIAQAEAAAREAEAAEAEAEAAQVFAKAAMKALKCKMLHIW* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03690 298 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 192 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phac3g03690 298 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Phac3g03690 298 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Phac3g03690 298 CDD SANT_TRF 6 57 - -
Phac3g03690 298 Gene3D - 126 202 IPR036388 -
Phac3g03690 298 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Phac3g03690 298 PANTHER SINGLE MYB HISTONE 4 1 293 IPR044597 GO:0003691
Phac3g03690 298 SMART h15plus2 128 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phac3g03690 298 Pfam linker histone H1 and H5 family 132 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Phac3g03690 298 SMART sant 4 59 IPR001005 -
Phac3g03690 298 FunFam Telomere repeat-binding factor 1 2 58 - -
Phac3g03690 298 Coils Coil 245 282 - -
Phac3g03690 298 SUPERFAMILY "Winged helix" DNA-binding domain 128 201 IPR036390 -
Phac3g03690 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Phac3g03690 298 Gene3D - 2 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03690 Phac-Chr3 36837441 36846298 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03690 1 298 Single Myb Histone (SMH) Gene Family AT5G67580 53.465 1.28e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phac3g03690 Linker_histone 8.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03690 K09422 - gmx:100779583 439.884