Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03612 ATGAAAAATGCACAAATGGATGGTTACAAATTCTTTAACACACTTTGTGTTGCTTTCTTTTGTTTTTGTTTTTGGTGTCAGGACATGGATGATTACAATTTGTTTCCAGATGAGAGTGCCATGAACTTGAACTTGTTTGATGACCAAGAGTTTCTACCACAAGACATTGTGAATGCCCTTGAAGAACAGACACAGACCCTGCAGCAATCTCTGTCTTCGGAGTGCCCTTCCAAAACTGTGAGCAACTCCTCCACCGATGATGCCAGTTTTGACTTTGAGAGACCAGCCAAGTTACTGAAAACGACAAGCAGTAGTTGCTGTAACTCTGACTCATCCACCATCACCAATAACCTCTCACCGAAACTTTCCCCATCCACATCCTTCTCCTCCTTTCAGTCTCAGATTCTCTCTTTTGACAACTCCAACTCCTCCCCTCCCAACAACACCACCCAGTTTTACGGCTTTGACTTAAACCCAACTCAGAACGAAATGGTGTCAGTGTCAGTGCCCCAACCGACAAAATCACGGTTCCCTAATCAAACTCCAAAATGGTCCTCAAAAAATCAGAACTTTGAAACAAAACCCTCATCACATGGCAAGAGATCTCCTGCTCACGCTCAGGATCACATCATGGCCGAGAGAAAACGAAGAGAGAAGCTCAGCCAGAGCTTCATTGCTCTTGCAGCTCTTGTTCCTGGCCTAAAGAAGATGGATAAGGCTTCCGTGTTAGGGGACGCTATCAAATATGTGAAAGATCTTAAAGAGCGTTTGGCAGTGCTTGAAGAGCAGAGCAAGAAAACAAGGGGAGAATCGGTGGTGGTCCTGAACAAGCCAGACCTCTCAGGCGATGATGACTCTTCTTCATGTGATGAGAGCATTGATGCTGATAGTGTCAGTGACTCACTGTTTGAACTGGAATCGAGAGTGTCAGGGAAGGAGATGCTGCTTCGGATCCACTGCCGGAAGCAAAAGGGTCTTCTCGTCAAATTACTAGCGGAGATTCAAAGAAATAACCTCTTCGTTATTAACAGCAGTATCTTACCATTCGGTGATTCTATCCTTGACATTACCGTAGTTGCTCAGGTAGAAGGACAATCCTTACCTTAA 1107 0.4472 MKNAQMDGYKFFNTLCVAFFCFCFWCQDMDDYNLFPDESAMNLNLFDDQEFLPQDIVNALEEQTQTLQQSLSSECPSKTVSNSSTDDASFDFERPAKLLKTTSSSCCNSDSSTITNNLSPKLSPSTSFSSFQSQILSFDNSNSSPPNNTTQFYGFDLNPTQNEMVSVSVPQPTKSRFPNQTPKWSSKNQNFETKPSSHGKRSPAHAQDHIMAERKRREKLSQSFIALAALVPGLKKMDKASVLGDAIKYVKDLKERLAVLEEQSKKTRGESVVVLNKPDLSGDDDSSSCDESIDADSVSDSLFELESRVSGKEMLLRIHCRKQKGLLVKLLAEIQRNNLFVINSSILPFGDSILDITVVAQVEGQSLP* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03612 368 MobiDBLite consensus disorder prediction 171 215 - -
Phac3g03612 368 Coils Coil 243 270 - -
Phac3g03612 368 Pfam Helix-loop-helix DNA-binding domain 208 253 IPR011598 GO:0046983
Phac3g03612 368 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 204 253 IPR011598 GO:0046983
Phac3g03612 368 SMART finulus 210 259 IPR011598 GO:0046983
Phac3g03612 368 MobiDBLite consensus disorder prediction 198 215 - -
Phac3g03612 368 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 270 IPR036638 GO:0046983
Phac3g03612 368 Gene3D - 197 270 IPR036638 GO:0046983
Phac3g03612 368 PANTHER BHLH TRANSCRIPTION FACTOR 63 363 - -
Phac3g03612 368 CDD bHLH_AtNAI1_like 205 277 - -
Phac3g03612 368 MobiDBLite consensus disorder prediction 171 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03612 Phac-Chr3 36239704 36242213 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03612 83 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.522 1.35e-51 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac3g03612 HLH 4.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03612 - - var:108333272 520.39