Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03611 ATGATGGAGGAATCAAATAAACCAATGGATGAAGCTTCAGCACCCAGCTGGTTATCTGATTTGGACATGGATGATTACAATTTGTTTCCAGATGAGAGTGCCATGAACTTGAACTTGTTTGATGACCAAGAGTTTCTACCACAAGACATTGTGAATGCCCTTGAAGAACAGACACAGACCCTGCAGCAATCTCTGTCTTCGGAGTGCCCTTCCAAAACTGTGAGCAACTCCTCCACCGATGATGCCAGTTTTGACTTTGAGAGACCAGCCAAGTTACTGAAAACGACAAGCAGTAGTTGCTGTAACTCTGACTCATCCACCATCACCAATAACCTCTCACCGAAACTTTCCCCATCCACATCCTTCTCCTCCTTTCAGTCTCAGATTCTCTCTTTTGACAACTCCAACTCCTCCCCTCCCAACAACACCACCCAGTTTTACGGCTTTGACTTAAACCCAACTCAGAACGAAATGGTGTCAGTGTCAGTGCCCCAACCGACAAAATCACGGTTCCCTAATCAAACTCCAAAATGGTCCTCAAAAAATCAGAACTTTGAAACAAAACCCTCATCACATGGCAAGAGATCTCCTGCTCACGCTCAGGATCACATCATGGCCGAGAGAAAACGAAGAGAGAAGCTCAGCCAGAGCTTCATTGCTCTTGCAGCTCTTGTTCCTGGCCTAAAGAAGATGGATAAGGCTTCCGTGTTAGGGGACGCTATCAAATATGTGAAAGATCTTAAAGAGCGTTTGGCAGTGCTTGAAGAGCAGAGCAAGAAAACAAGGGGAGAATCGGTGGTGGTCCTGAACAAGCCAGACCTCTCAGGCGATGATGACTCTTCTTCATGTGATGAGAGCATTGATGCTGATAGTGTCAGTGACTCACTGTTTGAACTGGAATCGAGAGTGTCAGGGAAGGAGATGCTGCTTCGGATCCACTGCCGGAAGCAAAAGGGTCTTCTCGTCAAATTACTAGCGGAGATTCAAAGAAATAACCTCTTCGTTATTAACAGCAGTATCTTACCATTCGGTGATTCTATCCTTGACATTACCGTAGTTGCTCAGGTAGAAGGACAATCCTTACCTTAA 1089 0.4555 MMEESNKPMDEASAPSWLSDLDMDDYNLFPDESAMNLNLFDDQEFLPQDIVNALEEQTQTLQQSLSSECPSKTVSNSSTDDASFDFERPAKLLKTTSSSCCNSDSSTITNNLSPKLSPSTSFSSFQSQILSFDNSNSSPPNNTTQFYGFDLNPTQNEMVSVSVPQPTKSRFPNQTPKWSSKNQNFETKPSSHGKRSPAHAQDHIMAERKRREKLSQSFIALAALVPGLKKMDKASVLGDAIKYVKDLKERLAVLEEQSKKTRGESVVVLNKPDLSGDDDSSSCDESIDADSVSDSLFELESRVSGKEMLLRIHCRKQKGLLVKLLAEIQRNNLFVINSSILPFGDSILDITVVAQVEGQSLP* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03611 362 PANTHER BHLH TRANSCRIPTION FACTOR 57 357 - -
Phac3g03611 362 Coils Coil 237 264 - -
Phac3g03611 362 Gene3D - 191 264 IPR036638 GO:0046983
Phac3g03611 362 MobiDBLite consensus disorder prediction 165 191 - -
Phac3g03611 362 MobiDBLite consensus disorder prediction 1 21 - -
Phac3g03611 362 CDD bHLH_AtNAI1_like 199 271 - -
Phac3g03611 362 MobiDBLite consensus disorder prediction 165 209 - -
Phac3g03611 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 203 264 IPR036638 GO:0046983
Phac3g03611 362 MobiDBLite consensus disorder prediction 61 81 - -
Phac3g03611 362 Pfam Helix-loop-helix DNA-binding domain 202 247 IPR011598 GO:0046983
Phac3g03611 362 SMART finulus 204 253 IPR011598 GO:0046983
Phac3g03611 362 MobiDBLite consensus disorder prediction 192 209 - -
Phac3g03611 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 247 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03611 Phac-Chr3 36239704 36242213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03611 75 357 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.581 1.22e-51 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac3g03611 HLH 4.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03611 - - var:108333272 561.607