Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03597 ATGCCAGTTCCACTTGCTCCCTACCCTTCACCAACAGCTCCTTATACACCACCAGCTAATGGTGCACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTCATGTATCCAGCTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTAACAGGAGTGCCACCTCCTGGTACGTTGCTGTTTCTCCTCACTAAGTCTATTACTCTTTATATAATTCCCCTGGTTGTAGGTTATTTGAAAGTTCTGTGA 255 0.4667 MPVPLAPYPSPTAPYTPPANGAQSQLVCSGCRNLLMYPAGATSVCCAVCNAVTGVPPPGTLLFLLTKSITLYIIPLVVGYLKVL* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03597 84 PANTHER PROTEIN LSD1 14 55 IPR040319 -
Phac3g03597 84 MobiDBLite consensus disorder prediction 1 22 - -
Phac3g03597 84 Pfam LSD1 zinc finger 28 52 IPR005735 -
Phac3g03597 84 MobiDBLite consensus disorder prediction 1 16 - -
Phac3g03597 84 NCBIfam zinc finger domain, LSD1 subclass 25 54 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03597 Phac-Chr3 36083700 36086116 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Phac3g03597 zf-LSD1 1.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03597 - - zju:107403596 106.301