Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03595 ATGCCAGTTCCACTTGCTCCCTACCCTTCACCAACAGCTCCTTATACACCACCAGCTAATGGTGCACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTCATGTATCCAGCTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTAACAGGAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGCGGAGGTTGCCATACTCTACTCATGTACATCCGTGGAGCGACAAATGTGCAATGTTCTTGTTGTCACACGGTCAATCTAGCTTTAGAAGCAAACCAGGTGGCACATGTCAACTGTGGGAACTGCAGGATGCTACTCATGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACATCAGTTGGGGCCACAACAAGCACCACTGAGCAGAAGTTCAACACTGTAACCATACAATAG 450 0.48 MPVPLAPYPSPTAPYTPPANGAQSQLVCSGCRNLLMYPAGATSVCCAVCNAVTGVPPPGTEMAQLVCGGCHTLLMYIRGATNVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGATTSTTEQKFNTVTIQ* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03595 149 SUPERFAMILY Multiheme cytochromes 28 126 IPR036280 -
Phac3g03595 149 Pfam LSD1 zinc finger 67 91 IPR005735 -
Phac3g03595 149 Pfam LSD1 zinc finger 28 52 IPR005735 -
Phac3g03595 149 Pfam LSD1 zinc finger 105 129 IPR005735 -
Phac3g03595 149 NCBIfam zinc finger domain, LSD1 subclass 25 54 IPR005735 -
Phac3g03595 149 NCBIfam zinc finger domain, LSD1 subclass 102 132 IPR005735 -
Phac3g03595 149 NCBIfam zinc finger domain, LSD1 subclass 64 93 IPR005735 -
Phac3g03595 149 PANTHER PROTEIN LSD1 16 53 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03595 Phac-Chr3 36083286 36086116 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Phac3g03595 zf-LSD1 4.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03595 - - cit:102618163 278.87