Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03593 ATGCCAGTTCCACTTGCTCCCTACCCTTCACCAACAGCTCCTTATACACCACCAGCTAATGGTGCACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTCATGTATCCAGCTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTAACAGGAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGCGGAGGTTGCCATACTCTACTCATGTACATCCGTGGAGCGACAAATGTGCAATGTTCTTGTTGTCACACGGTCAATCTAGCTTTAGAAGGTATTTTACTACTAATGATCTCTCTGATGTTTAAAGAATTGTGTATGCATGATGGACAGAATTTAGGACATGTTTCTCTTGTGAGCTAA 378 0.455 MPVPLAPYPSPTAPYTPPANGAQSQLVCSGCRNLLMYPAGATSVCCAVCNAVTGVPPPGTEMAQLVCGGCHTLLMYIRGATNVQCSCCHTVNLALEGILLLMISLMFKELCMHDGQNLGHVSLVS* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03593 125 Pfam LSD1 zinc finger 28 52 IPR005735 -
Phac3g03593 125 Pfam LSD1 zinc finger 67 91 IPR005735 -
Phac3g03593 125 NCBIfam zinc finger domain, LSD1 subclass 64 93 IPR005735 -
Phac3g03593 125 NCBIfam zinc finger domain, LSD1 subclass 25 54 IPR005735 -
Phac3g03593 125 PANTHER PROTEIN LSD1 16 53 IPR040319 -
Phac3g03593 125 SUPERFAMILY Multiheme cytochromes 28 91 IPR036280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03593 Phac-Chr3 36083286 36086116 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Phac3g03593 zf-LSD1 3.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03593 - - zju:107403596 181.415