Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03588 ATGGGTTGCACCATGAGGGAAAAACATATCAGGGCTAATCGGAGACCCCGATCGGCGAAACCGGACCCGGATTCTTGCGACAAAGATGCCATATCCAAATCCATAGCCGAGTCTGGTCTCAAGCCCTTCAGATACCATATGGCTGTCAACGATTCTTCCCCGAGCCCAAATTCAAACCCTAATGTGGAGGAAACCGGGTGGGGTTACTGTACAGAGGAACAATTGGAAGAGATTCTGTTGAAAAACTTGGAGTTCATTTACAATGAAGCTGTCTCAAAGCTTGTTGCGTTGGGTTACGATGAGGATGTTGCTGTTAAGGCCATGCTGCGAAATGGGCATTGTTATGGTGGCATGGATGCGCTGACAAATATTTTGCACAATTCTTTGGCGTATTTGAATAGTAATAGTGATGGTGGTGGTGGTGGTGGGAATATGGATGAGACTGAGCCCGTGTTCTCTAATTTGAGGCAGTTAGAGGAGTACTCTGTGGCGGCTTTGGTGTGTTTGGTGCAACAGGTGAGGCCACATTTGAGCAAAGGTGATGCCATGTGGTGTTTGCTCATGAATGATCTTCATGTTGGGAGGGCTAGTGCTATGGATATTCATGTGCCAGGCACTGGGAGCCCTGCTCCGGTTACCGGTGAGGGTGGTGGCAATTCGATTGGTGTTATGGGACCGGCTTTTTGTAGGTTTCATGGAGGGTGGGGATTTGGAAATGGGGGAGGCTTGGATTTTCCAGTGAATGGGATATTCTCTTGCGGGACAGAGATGAATTTGCAGCTGCAAAGAGACATTGAGTTTCCGAAGAGGTTTAACCTTTCTCCTTCAATGAAGTCCTTATTAAAGAGAAATGTTGCAATGTTTGCTGCTGGTTTTAGGGCAAACTCCAAGCAGTTGCAGGCGCAGGCAAAGACCATTTCTGGGCGGAGTACTGCACAACATAGTTTGGATTCTTTTACTGCGACCGGGACAGGAGTCCCGGCTGAGCAGTCTGGAGGAGATTCACAGAATCTCGATAACCAAGACGCTGTGAATTCGGTGCTGAGTAAATTTCGTGATTTGAATCTTGATGAAAATTTGGAGCTTGTGGCGGAAGATCAGAAGGATGAGGTGATAGTCACTTTATTTCATCAGATTAAGGATCTTGAGAAGCAGGTCGGTGAGCGAAAAGACTGGGCTCATCAGAAGGCAATGCAGGCTGCCAGAAAGCTAAGCAGTGATCTAACTGAACTCAAAATGTTGCGGATGGAAAGAGAGGAGACTCAGAAATTGAAGAAAGGGAAACCGGCCCTTGAGGACACAACCATGAAGAGGCTTTCAGAGATGGAGAATGCTTTGAGAAAGGCCAGTGGTCAACTGGACCTTGCGAATGCAGCTGTGAGGAGACTAGAAACTGAGAATGCAGAAATGAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAGTCAGTGACAGCTTGCTTAGAAGTTGCAAAAAGGGAGAAAAAATGTTTAAAAAAACTTCTAGCTTGGGAAAAACAGAAAGCTAAGCTGCAGCAAGAGATTTCTGGTGAAAAACAGAAGATATCAGAGACACAAGAAATGTTGGTTCAGATTAGACAGTATCAAAAGGAAGCTGAGGTCAAGTGGAAGGAGGAGTTGAAGGCTAAAGAGGAAGCCTTAGTACTGGTTGAGGAGGAACGGCGCTCTAAGGAAGCAGCTGAGTCTAATAATAAGAGGAGGATTGAGGCTTTGCGTCTGAAGATAGAGATAGATTTCCAGCGCCACAAGGATGATCTATTAAGACTGGAGCAGGAACTTTCGCGCCTTAAAGTATCTGCTCAGTCTGCTGAGTTGCATCACCAATCAAGCACTTCACCTACAAGCAACTCTGAGGGCACAAAGCCCCAAAGAGAGACCATTGCTAGGCTGCTTCAACAATTAGATAATCTGGACGATTTTTCAGATAAAGAAGTGAATAGCAACAGAGAATGCATTATATGTATGAAAGATGAAGTCTCAATTGTTTTCTTGCCGTGTGCACACCAAGTTATGTGTGCTAGTTGCAGTGATGAGTATGGAAGAAAAGGAGGTAAGGCTGCTTGCCCTTGCTGCAGGGTTCAAATCCAACAGAGAATCCGTGTATTTGGGGCAAGTTCCTAA 2145 0.4573 MGCTMREKHIRANRRPRSAKPDPDSCDKDAISKSIAESGLKPFRYHMAVNDSSPSPNSNPNVEETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDEDVAVKAMLRNGHCYGGMDALTNILHNSLAYLNSNSDGGGGGGNMDETEPVFSNLRQLEEYSVAALVCLVQQVRPHLSKGDAMWCLLMNDLHVGRASAMDIHVPGTGSPAPVTGEGGGNSIGVMGPAFCRFHGGWGFGNGGGLDFPVNGIFSCGTEMNLQLQRDIEFPKRFNLSPSMKSLLKRNVAMFAAGFRANSKQLQAQAKTISGRSTAQHSLDSFTATGTGVPAEQSGGDSQNLDNQDAVNSVLSKFRDLNLDENLELVAEDQKDEVIVTLFHQIKDLEKQVGERKDWAHQKAMQAARKLSSDLTELKMLRMEREETQKLKKGKPALEDTTMKRLSEMENALRKASGQLDLANAAVRRLETENAEMKAEMEASKLSASESVTACLEVAKREKKCLKKLLAWEKQKAKLQQEISGEKQKISETQEMLVQIRQYQKEAEVKWKEELKAKEEALVLVEEERRSKEAAESNNKRRIEALRLKIEIDFQRHKDDLLRLEQELSRLKVSAQSAELHHQSSTSPTSNSEGTKPQRETIARLLQQLDNLDDFSDKEVNSNRECIICMKDEVSIVFLPCAHQVMCASCSDEYGRKGGKAACPCCRVQIQQRIRVFGASS* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03588 714 Coils Coil 587 614 - -
Phac3g03588 714 ProSiteProfiles Zinc finger RING-type profile. 659 700 IPR001841 -
Phac3g03588 714 SUPERFAMILY RING/U-box 640 706 - -
Phac3g03588 714 Pfam Family of unknown function (DUF6592) 82 199 IPR046527 -
Phac3g03588 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 646 711 IPR013083 -
Phac3g03588 714 Coils Coil 541 571 - -
Phac3g03588 714 MobiDBLite consensus disorder prediction 608 630 - -
Phac3g03588 714 MobiDBLite consensus disorder prediction 318 340 - -
Phac3g03588 714 SMART ring_2 659 699 IPR001841 -
Phac3g03588 714 Pfam Zinc finger, C3HC4 type (RING finger) 656 705 - -
Phac3g03588 714 Coils Coil 439 480 - -
Phac3g03588 714 Coils Coil 495 529 - -
Phac3g03588 714 MobiDBLite consensus disorder prediction 16 30 - -
Phac3g03588 714 CDD RING-HC_MIP1-like 654 709 - -
Phac3g03588 714 PANTHER OS05G0141500 PROTEIN 1 709 IPR046934 -
Phac3g03588 714 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03588 Phac-Chr3 36039102 36045519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03588 645 710 C3H Transcription Factor Family AT1G73950 35.714 9.45e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03588 - - gmx:100777787 1188.71