Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03493 ATGTCATCATGCTCTCCAATAGAGTTAGAGACTAAAATGTCACAATCAAGTACGGATTTGATTGCAAGAGGTGGACAGGATGGTGGAAATACAATATCATACTCTCAAAGAGCAATGGAAGTTGAAACAGTGGACGTTGCTGTGAATTTGAATGCAAGTTATGAACAGGGTGGTGGACAAGGTGAAATCACAACATTAGGCAATCCAAGTGCAATGGAAACTAAAATGACTGTCTCAAATGAGGAATTCACTGCTGGAAACACAACATTAAGCACTCCAAGAGCAATGGACACTGTGAATGTTGAGTCAAGTGAAGGCTTGAGTGCAAGACATGGACAGGGTTGTGGACAAGATGAAATCATAAGATTAGGCACTCCAAGAGAAATGGAGACCCAAATGATAGTCTCAAGTGAGGGTTTGACTGTTGGAAAGACCTCACTAAGCACTCAAAGAGCAATAGAGATTGTAAGGGTTGAGTCAAGTGGGGACATGATTGCTGGAAAGGCAACATCATGCACCACTCCAAGAGCAATGGAGATGGAATTGGTGGATGCAGGTGGAGATTCAATTGCAGAACAAAAGCAGGATCATGGACAAGGCAACAAGACAAAATTCAGCATTTCAAGGGAAATAGAGACAGAAACAGTGATCTTTAGGGCTGATTTGATGGCAACGCCTAAACAAATCTTTGGAAAAGGTGGAACATCAGGCACTCTAAGAGCAGTGAAGAATACAATGGAAGAGACAAGCATGGAGCCAATTGCTAGATGCAAAAGGGTTTGTGGACGAGGTGTAAGAGAAAAAGGTCCATCATCACCTGAAGGAAAAGCAGCAGACAAGAAAAGAGATTCACCTTTTCCTGAAAGAGCAGGGTCAGCTAAACGAGGTGCAAGAAGAGGCATGCAGGGTACATGGAACCATCCTACTCAGAAGAGGGCAAGAATAAGAGAAGAAAACAAGGAAATTTGTGATCATAGACCAAGCTCAATAATGGAAGAAGGTCCGTCATCACCCGAAAGACAAGCAGCAAACAACAAAAGAGGTTCACCTTTGCTTGAAAGAGTTAGGTCATGTAAAAGAGGCAGAAAAAGGGGCATGCAGGGTACATCAAGCCAACCTAGTCAGAAGAGGGTAAGACTAGTAGAACAAAACAAAGAAGTTAGTAATCCTGGACCAAGCTCAATAATGGAAAATGGTCCATCATCACTTGAAAGACAAGCAGCAAACAAGAAAAGAGGTTCACCTTCATCTGAAAGAGTAAGGTCATGTAAGAAAAGCACTTGTTTTTTATGGTTGATAGACTCTAGGATTATTAAGAAAGATGAACGAGTAAGCTATAAGAGTGCCACAATGAAAAAGGCATTAGCAGGAAGGATTACTAGGGGTGGAATTCTCTGCAGCTGTTGCCAGGAGGAGATATCAATGTGGACCTTTGAGAAGCATGCTGGAAGTGATCTTAGACAGCCCTATAAACATATTTACATTCACAGAAAACATAAATCCCTCCGAAAATGCCTGATTGAAGCTTGGCAACATGCTCGGGAACAAAAGCGTCGGCGCATGTTTTTGTATGTGCCAAAAGAAACTGATGCAGACCAAAATGATGATGTTTGTTCAGTCTGTGGCGATGGGGGAGACTTAATCTGTTGTGACAAGTGTCCTTCCACATATCATCTATCTTGCATGAATATAGAGACGGTTCCCCAAAATGATTGGTTTTGTCCATACTGTGTATGCAAACACTGTGGGCTGGTTGTGAACCTGGTTGTTGATAAAAAAGAATACTATGAGAAAAAAGAAGGCTTCAAGTGCTCCCAATGTGACAAGAAGTATCATTGGGAGTGCTTTGAAAAATCTGAAAAAGAATCCTCAAGACAAACTCCGGACTTTAACCCTTCAAGATCATATTGTGGGCAAGGTTGCCAACGGATACATGAGAAAATGGGAGTATATCTCGGAATCAGAAATGATTATTCGGCAAAATACTCTTGGAGGGTTATCCGCGTAATGGAGACATACAAGAAGAATACTGCAGATATGAATCTATTCTTAGAAAACAATTCAAGGGTTGCAGTTTCTTGGATGTTAATGAATGAAGCTTTTAAGACAATAACTGACAGGAAAACGGGCATCAATGTGATTCGAAGTATAGTTTACAGCTGCAAGTCAAACTTAACCAGGATTGATTTTAGCCGTTTTTATATGTTTGTTCTGGAGGAAGATGATGCGATCATTGCTGCAGCTTCTATAAGTGTGTGGGACAGCCATTATTTATCCTTGCATGGTTGTTTCGAATTCAAGCCCATAATCAACCAGTCAGTCACAGGCACAATTTATGTGTTGTACCACGGTTCACCCTGTGCCTTCGCCATGTATTTATAA 2382 0.4123 MSSCSPIELETKMSQSSTDLIARGGQDGGNTISYSQRAMEVETVDVAVNLNASYEQGGGQGEITTLGNPSAMETKMTVSNEEFTAGNTTLSTPRAMDTVNVESSEGLSARHGQGCGQDEIIRLGTPREMETQMIVSSEGLTVGKTSLSTQRAIEIVRVESSGDMIAGKATSCTTPRAMEMELVDAGGDSIAEQKQDHGQGNKTKFSISREIETETVIFRADLMATPKQIFGKGGTSGTLRAVKNTMEETSMEPIARCKRVCGRGVREKGPSSPEGKAADKKRDSPFPERAGSAKRGARRGMQGTWNHPTQKRARIREENKEICDHRPSSIMEEGPSSPERQAANNKRGSPLLERVRSCKRGRKRGMQGTSSQPSQKRVRLVEQNKEVSNPGPSSIMENGPSSLERQAANKKRGSPSSERVRSCKKSTCFLWLIDSRIIKKDERVSYKSATMKKALAGRITRGGILCSCCQEEISMWTFEKHAGSDLRQPYKHIYIHRKHKSLRKCLIEAWQHAREQKRRRMFLYVPKETDADQNDDVCSVCGDGGDLICCDKCPSTYHLSCMNIETVPQNDWFCPYCVCKHCGLVVNLVVDKKEYYEKKEGFKCSQCDKKYHWECFEKSEKESSRQTPDFNPSRSYCGQGCQRIHEKMGVYLGIRNDYSAKYSWRVIRVMETYKKNTADMNLFLENNSRVAVSWMLMNEAFKTITDRKTGINVIRSIVYSCKSNLTRIDFSRFYMFVLEEDDAIIAAASISVWDSHYLSLHGCFEFKPIINQSVTGTIYVLYHGSPCAFAMYL* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03493 793 ProSiteProfiles Zinc finger PHD-type profile. 535 580 IPR019787 -
Phac3g03493 793 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 525 601 IPR013083 -
Phac3g03493 793 PANTHER PHD FINGER PROTEIN 12 326 752 IPR042163 GO:0003714|GO:0045892
Phac3g03493 793 MobiDBLite consensus disorder prediction 310 328 - -
Phac3g03493 793 MobiDBLite consensus disorder prediction 262 419 - -
Phac3g03493 793 MobiDBLite consensus disorder prediction 364 378 - -
Phac3g03493 793 CDD PHD2_CHD_II 537 577 - -
Phac3g03493 793 MobiDBLite consensus disorder prediction 386 410 - -
Phac3g03493 793 Pfam Tify domain binding domain 457 509 IPR032308 -
Phac3g03493 793 SMART PHD_3 537 578 IPR001965 -
Phac3g03493 793 SMART PHD_3 579 642 IPR001965 -
Phac3g03493 793 Pfam PHD-finger 537 579 IPR019787 -
Phac3g03493 793 SUPERFAMILY FYVE/PHD zinc finger 528 583 IPR011011 -
Phac3g03493 793 MobiDBLite consensus disorder prediction 262 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03493 Phac-Chr3 35275657 35284624 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03493 397 750 PHD Transcription Factor Family AT4G14920 36.842 8.89e-71 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac3g03493 TDBD 9.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03493 - - pvu:PHAVU_009G190800g 1428.31