Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03490 ATGTCATCATGCTCTCCAATAGAGTTAGAGACTAAAATGTCACAATCAAGTACGGATTTGATTGCAAGAGGTGGACAGGATGGTGGAAATACAATATCATACTCTCAAAGAGCAATGGAAGTTGAAACAGTGGACGTTGCTGTGAATTTGAATGCAAGTTATGAACAGGGTGGTGGACAAGGTGAAATCACAACATTAGGCAATCCAAGTGCAATGGAAACTAAAATGACTGTCTCAAATGAGGAATTCACTGCTGGAAACACAACATTAAGCACTCCAAGAGCAATGGACACTGTGAATGTTGAGTCAAGTGAAGGCTTGAGTGCAAGACATGGACAGGGTTGTGGACAAGATGAAATCATAAGATTAGGCACTCCAAGAGAAATGGAGACCCAAATGATAGTCTCAAGTGAGGGTTTGACTGTTGGAAAGACCTCACTAAGCACTCAAAGAGCAATAGAGATTGTAAGGGTTGAGTCAAGTGGGGACATGATTGCTGGAAAGGCAACATCATGCACCACTCCAAGAGCAATGGAGATGGAATTGGTGGATGCAGGTGGAGATTCAATTGCAGAACAAAAGCAGGATCATGGACAAGGCAACAAGACAAAATTCAGCATTTCAAGGGAAATAGAGACAGAAACAGTGATCTTTAGGGCTGATTTGATGGCAACGCCTAAACAAATCTTTGGAAAAGGTGGAACATCAGGCACTCTAAGAGCAGTGAAGAATACAATGGAAGAGACAAGCATGGAGCCAATTGCTAGATGCAAAAGGGTTTGTGGACGAGGTGTAAGAGAAAAAGGTCCATCATCACCTGAAGGAAAAGCAGCAGACAAGAAAAGAGATTCACCTTTTCCTGAAAGAGCAGGGTCAGCTAAACGAGGTGCAAGAAGAGGCATGCAGGGTACATGGAACCATCCTACTCAGAAGAGGGCAAGAATAAGAGAAGAAAACAAGGAAATTTGTGATCATAGACCAAGCTCAATAATGGAAGAAGGTCCGTCATCACCCGAAAGACAAGCAGCAAACAACAAAAGAGGTTCACCTTTGCTTGAAAGAGTTAGGTCATGTAAAAGAGGCAGAAAAAGGGGCATGCAGGGTACATCAAGCCAACCTAGTCAGAAGAGGGTAAGACTAGTAGAACAAAACAAAGAAGTTAGTAATCCTGGACCAAGCTCAATAATGGAAAATGGTCCATCATCACTTGAAAGACAAGCAGCAAACAAGAAAAGAGGTTCACCTTCATCTGAAAGAGTAAGGTCATGTAAGAAAAGCACTTGTTTTTTATGGTTGATAGACTCTAGGATTATTAAGAAAGATGAACGAGTAAGCTATAAGAGTGCCACAATGAAAAAGGCATTAGCAGGAAGGATTACTAGGGGTGGAATTCTCTGCAGCTGTTGCCAGGAGGAGATATCAATGTGGACCTTTGAGAAGCATGCTGGAAGTGATCTTAGACAGCCCTATAAACATATTTACATTCACAGAAAACATAAATCCCTCCGAAAATGCCTGATTGAAGCTTGGCAACATGCTCGGGAACAAAAGCGTCGGCGCATGTTTTTGTATGTGCCAAAAGAAACTGATGCAGACCAAAATGATGATGTTTGTTCAGTCTGTGGCGATGGGGGAGACTTAATCTGTTGTGACAAGTGTCCTTCCACATATCATCTATCTTGCATGAATATAGAGACGGTTCCCCAAAATGATTGGTTTTGTCCATACTGTGTATGCAAACACTGTGGGCTGGTTGTGAACCTGGTTGTTGATAAAAAAGAATACTATGAGAAAAAAGAAGGCTTCAAGTGCTCCCAATGTGACAAGAAGTATCATTGGGAGTGCTTTGAAAAATCTGAAAAAGAATCCTCAAGACAAACTCCGGACTTTAACCCTTCAAGATCATATTGTGGGCAAGGTTGCCAACGGATACATGAGAAAATGGGAGTATATCTCGGAATCAGAAATGATTATTCGGCAAAATACTCTTGGAGGGTTATCCGCGTAATGGAGACATACAAGAAGAATACTGCAGATATGAATCTATTCTTAGAAAACAATTCAAGGGTTGCAGTTTCTTGGATGTTAATGAATGAAGCTTTTAAGACAATAACTGACAGGAAAACGGGCATCAATGTGATTCGAAGTATAGTTTACAGCTGCAATCAGGCATTAACAATTCAACCTTTTGATCCGCTGTTACAATTACTATTCAGGTCAAACTTAACCAGGATTGATTTTAGCCGTTTTTATATGTTTGTTCTGGAGGAAGATGATGCGATCATTGCTGCAGCTTCTATAAGATTTCACGGGACAAGGATTGCAGAAATGCCATTTATTGTAACAGAAAGGGCACACAGGGGCCAAGGAGTTTGCCAGGAATTAATGAGGGTGATTGAATCGTTTCTATGCAATGTTAAAGTCGAGAAGTTGATAATTCCATCTGCTGTGGAGACTTGTGATATGTGGAAGCGCAAGTACAACTTTACTGAGGTGAGTGAAGAGCTGAAGAAAGAAATATCCTCCTATAATATTGTGATGTTCCCTTGTGCTGTAAGACTGTACAAGGACTTGTCAGCAAGCATAGCAGACATTAAGAATGATCTGGAACCACAAACAGAGCATGCAGAGGTTACTACTAGACTTGAACATGGATCCTCACCAGGAAGATTAGAAGAAGTAAAAGAGTTGTAG 2694 0.4102 MSSCSPIELETKMSQSSTDLIARGGQDGGNTISYSQRAMEVETVDVAVNLNASYEQGGGQGEITTLGNPSAMETKMTVSNEEFTAGNTTLSTPRAMDTVNVESSEGLSARHGQGCGQDEIIRLGTPREMETQMIVSSEGLTVGKTSLSTQRAIEIVRVESSGDMIAGKATSCTTPRAMEMELVDAGGDSIAEQKQDHGQGNKTKFSISREIETETVIFRADLMATPKQIFGKGGTSGTLRAVKNTMEETSMEPIARCKRVCGRGVREKGPSSPEGKAADKKRDSPFPERAGSAKRGARRGMQGTWNHPTQKRARIREENKEICDHRPSSIMEEGPSSPERQAANNKRGSPLLERVRSCKRGRKRGMQGTSSQPSQKRVRLVEQNKEVSNPGPSSIMENGPSSLERQAANKKRGSPSSERVRSCKKSTCFLWLIDSRIIKKDERVSYKSATMKKALAGRITRGGILCSCCQEEISMWTFEKHAGSDLRQPYKHIYIHRKHKSLRKCLIEAWQHAREQKRRRMFLYVPKETDADQNDDVCSVCGDGGDLICCDKCPSTYHLSCMNIETVPQNDWFCPYCVCKHCGLVVNLVVDKKEYYEKKEGFKCSQCDKKYHWECFEKSEKESSRQTPDFNPSRSYCGQGCQRIHEKMGVYLGIRNDYSAKYSWRVIRVMETYKKNTADMNLFLENNSRVAVSWMLMNEAFKTITDRKTGINVIRSIVYSCNQALTIQPFDPLLQLLFRSNLTRIDFSRFYMFVLEEDDAIIAAASIRFHGTRIAEMPFIVTERAHRGQGVCQELMRVIESFLCNVKVEKLIIPSAVETCDMWKRKYNFTEVSEELKKEISSYNIVMFPCAVRLYKDLSASIADIKNDLEPQTEHAEVTTRLEHGSSPGRLEEVKEL* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03490 897 ProSiteProfiles Zinc finger PHD-type profile. 535 580 IPR019787 -
Phac3g03490 897 CDD NAT_SF 752 813 - -
Phac3g03490 897 MobiDBLite consensus disorder prediction 310 328 - -
Phac3g03490 897 MobiDBLite consensus disorder prediction 262 419 - -
Phac3g03490 897 MobiDBLite consensus disorder prediction 364 378 - -
Phac3g03490 897 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 724 834 IPR016181 -
Phac3g03490 897 CDD PHD2_CHD_II 537 577 - -
Phac3g03490 897 Gene3D - 724 847 - -
Phac3g03490 897 MobiDBLite consensus disorder prediction 386 410 - -
Phac3g03490 897 SUPERFAMILY FYVE/PHD zinc finger 528 583 IPR011011 -
Phac3g03490 897 SMART PHD_3 537 578 IPR001965 -
Phac3g03490 897 SMART PHD_3 579 642 IPR001965 -
Phac3g03490 897 Pfam PHD-finger 537 579 IPR019787 -
Phac3g03490 897 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 699 859 IPR000182 GO:0016747
Phac3g03490 897 MobiDBLite consensus disorder prediction 262 295 - -
Phac3g03490 897 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 525 601 IPR013083 -
Phac3g03490 897 MobiDBLite consensus disorder prediction 874 897 - -
Phac3g03490 897 PANTHER PHD FINGER PROTEIN 12 332 870 IPR042163 GO:0003714|GO:0045892
Phac3g03490 897 Pfam Tify domain binding domain 457 509 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03490 Phac-Chr3 35275657 35284624 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03490 397 860 PHD Transcription Factor Family AT4G14920 37.367 1.06e-97 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac3g03490 TDBD 1.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03490 - - pvu:PHAVU_009G190800g 1676.37