Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03478 ATGATGGTTCAAAAGGAAGATTTGGGTTTGAGTCTAAGCCTCAACTTCCGTCACAATATCCCAAATCCTCAACATCTTACACTCATCTCCTCCTCAACTCATTCATCTTCCCCTTCTGCTTCAAATCCTTTTAAACCCTCTTGGAACGACCCTTTCGCCTCTTCGGATCGAAACTCGGACACATGCAGAGGCGAAACCCGATCTTTCCTCCGCGGAATCGACGTGAATCGGTTACCTTCGGCCGTGGACATGGAAGAGGAAGCGGGAGTTTCGTCTCCGAACAGCACCGTCTCGAGCGTGAGCGGAAAGCGAAGCGAGCGAGAACCCAACGGTGAAGAACACGACATGAACAGAGCGTGTTCCCGCGGAATCAGCGACGAAGAAGACGGCGAAACCTCGAGGAAAAAACTCCGACTCTCCAAAGACCAATCAGCTATTCTTGAAGAAAGTTTCAAAGAGCACAATACCCTCAACCCGAAGCAAAAGCTGGCACTTGCAAAACAGCTAGGCCTTCTACCAAGACAAGTTGAGGTGTGGTTCCAAAACCGGAGGGCAAGGACTAAACTGAAGCAGACTGAGGTAGATTGCGAGGTGTTGAAAAGGTGTTGCGAGAATCTGACGGAGGAAAATAGAAGGTTGCAGAAGGAAGTTCAGGAGCTTAGAGCACTCAAACTTTCCCCTCAGTTTTACATGCAAATGACCCCACCCACCACACTCACAATGTGCCCATCTTGCGAGCGGGTGGCTGTTCCGTCCTCCGCCGTTGATGCCGCCACACGTCATCATCCCATGGCCCAGGCCCAGACACACGGTCGGCCCATACCCATTGGGCCATGGGCTTCCGCTGGTCCCATTCCGCAGCGGGCTTTTGATGGTTTCCACCAGTGA 888 0.5203 MMVQKEDLGLSLSLNFRHNIPNPQHLTLISSSTHSSSPSASNPFKPSWNDPFASSDRNSDTCRGETRSFLRGIDVNRLPSAVDMEEEAGVSSPNSTVSSVSGKRSEREPNGEEHDMNRACSRGISDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLLPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVDAATRHHPMAQAQTHGRPIPIGPWASAGPIPQRAFDGFHQ* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03478 295 Pfam HD-ZIP protein N terminus 2 108 IPR006712 GO:0005634
Phac3g03478 295 MobiDBLite consensus disorder prediction 82 138 - -
Phac3g03478 295 MobiDBLite consensus disorder prediction 27 59 - -
Phac3g03478 295 SMART HOX_1 132 194 IPR001356 GO:0003677
Phac3g03478 295 SUPERFAMILY Homeodomain-like 122 191 IPR009057 -
Phac3g03478 295 CDD homeodomain 134 191 IPR001356 GO:0003677
Phac3g03478 295 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 41 266 - -
Phac3g03478 295 MobiDBLite consensus disorder prediction 105 138 - -
Phac3g03478 295 FunFam Homeobox-leucine zipper protein 18 121 195 - -
Phac3g03478 295 Pfam Homeodomain 134 188 IPR001356 GO:0003677
Phac3g03478 295 Pfam Homeobox associated leucine zipper 190 224 IPR003106 GO:0006355|GO:0043565
Phac3g03478 295 MobiDBLite consensus disorder prediction 89 104 - -
Phac3g03478 295 Gene3D - 138 188 - -
Phac3g03478 295 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
Phac3g03478 295 SMART halz 190 233 IPR003106 GO:0006355|GO:0043565
Phac3g03478 295 PRINTS Lambda-repressor HTH signature 161 170 IPR000047 GO:0003677
Phac3g03478 295 PRINTS Lambda-repressor HTH signature 170 186 IPR000047 GO:0003677
Phac3g03478 295 MobiDBLite consensus disorder prediction 27 65 - -
Phac3g03478 295 Coils Coil 189 226 - -
Phac3g03478 295 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03478 Phac-Chr3 35163236 35165452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03478 1 285 Homeobox Transcription Factor Family AT4G16780 63.448 4.19e-109 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phac3g03478 HD-ZIP_N 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03478 K09338 - gmx:100787231 498.049