Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03427 ATGGATAATAGACACAAATGCAAGCTTTGTTCAAGGTCTTTCACCAATGGCAGAGCCCTTGGGGGTCACATGAAGGCTCATCTCGCAACTCTCCCTCTTCCTCCAAAGCCTCAAACTTTAACCCACTCTTCCTTCACTTATTCCTCTTCCTCAGACTCTGAGCAAGAACAACTCAAAGAACAAGATTCTCTTAGTTACGCGCTCAGGGAGAATCCTAAGAAGAGCTTCAGAGTAACGGATCCTGAAGACAGAGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCAGCGATCCAAGCGGAACAGGAAATCGGCCATGCTGAAGCTCAGCTTCGTGGTGTCCACACCTCTCATCACCGAACCCGAACCTGTAAGTTCAGTCTCCGACACCTCCCCGGAGGAAGACGTAGCCATGAGCCTCATGATGCTCTCCCGCGACACGTGGAACGTAGTCCCCAATGCAGGTCCACCGCAGAGATCAAAGAGGCACTGCACGGGATCAGAGACCAAGCTCAAGAAACTCCGCGGCAAGTACCTCTGTCACACATGCGGCAAAGCCTTTCGATCCTCTCGGGCCTTGGGGAGTCACAGAACCATTTGTTGCCGTCAAGAGGAAGTTCAAAATCAAAACAACAACAACAATAGTATTAAGGTTTTTGAATGTCCCTTTTGTTACAAGGTGTTCGGCTCTGGTCAAGCTCTGGGCGGACACAAGAGATCTCATCTAATCCCTTCATCATCTTCAACAGTTAACGATTCCCTTAAATTCAAACAGACCTTCATAGATCTCAACATGCCGGCGCCGCCAGAAGAGGACGACCTTAGTGTTGTCTCTGATGCCTAA 843 0.4958 MDNRHKCKLCSRSFTNGRALGGHMKAHLATLPLPPKPQTLTHSSFTYSSSSDSEQEQLKEQDSLSYALRENPKKSFRVTDPEDRESETESKNPTRQRSKRNRKSAMLKLSFVVSTPLITEPEPVSSVSDTSPEEDVAMSLMMLSRDTWNVVPNAGPPQRSKRHCTGSETKLKKLRGKYLCHTCGKAFRSSRALGSHRTICCRQEEVQNQNNNNNSIKVFECPFCYKVFGSGQALGGHKRSHLIPSSSSTVNDSLKFKQTFIDLNMPAPPEEDDLSVVSDA* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03427 280 SUPERFAMILY beta-beta-alpha zinc fingers 4 198 IPR036236 -
Phac3g03427 280 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Phac3g03427 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Phac3g03427 280 SUPERFAMILY beta-beta-alpha zinc fingers 217 242 IPR036236 -
Phac3g03427 280 MobiDBLite consensus disorder prediction 36 64 - -
Phac3g03427 280 ProSitePatterns Zinc finger C2H2 type domain signature. 221 241 IPR013087 -
Phac3g03427 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 205 IPR013087 -
Phac3g03427 280 SMART c2h2final6 219 241 IPR013087 -
Phac3g03427 280 SMART c2h2final6 178 198 IPR013087 -
Phac3g03427 280 SMART c2h2final6 5 27 IPR013087 -
Phac3g03427 280 Pfam C2H2-type zinc finger 218 242 - -
Phac3g03427 280 Pfam C2H2-type zinc finger 178 197 - -
Phac3g03427 280 Pfam C2H2-type zinc finger 4 29 - -
Phac3g03427 280 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 280 IPR044303 GO:0006355
Phac3g03427 280 MobiDBLite consensus disorder prediction 31 106 - -
Phac3g03427 280 Gene3D Classic Zinc Finger 175 241 - -
Phac3g03427 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 241 IPR013087 -
Phac3g03427 280 MobiDBLite consensus disorder prediction 73 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03427 Phac-Chr3 34709054 34711026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03427 5 277 C2H2 Transcription Factor Family AT3G60580 37.748 4.71e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac3g03427 zf-C2H2_6 3.3e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03427 - - gmx:100806512 366.696