Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03340 ATGAAGCTGGAAAACATGGTAAAATTAAAGCAGAAAATTGATTACAAAAGTTTATGTAGAAGGCTAGACATAGAACTAGACAAACTCACCATGGAATACCAAAGGAAGCAGAAGGAATTTCAGGAGGATATTGAAGGATTCACCACAGAAGGACAGCATCAGATATCAGAGACCCAAAAAGGCTATTCGGATTCACTGGAGAAGGAAAGAATGAAATATCAGAAAAACTATAATAAGGAATCAATTAAGGTGCTAGAAGAGAAGGTGATGGAGAATAAGAAAAAGTACGAGGATTTTTGTATGACATCTACTGGAGAGATGGCCATTGTGCCTGCTGAGGAAGCAGTCATTTTGAAAAAAATACTTCAGAAAGAGACTCTTAAAAGAAATGCTACCGAAGGGGAGCTAAATCATCTGAAAAATCAAATGGAAGAAATGAAAATGTGGGAGGCATCAAGAGAGTCAGATATCTCAAAACTTCGTAAGATGTTGGAAGATGAGGCACAGCAGAAGGAGAAACTCAAAGGAGAAATAGCCAGATTGCAAAGTCAACTGCAGCAATTAGGTTCTGAAGTTGGAAAAACAAAACAAAAATTTCGTCGAGGTGGATTTGAGAAAGTTGCTGGTGGTTTAGATTATTCTCCCCCTTTCCAGGTTAAACATCCACAGCAAGCTTCAGGAAATGGAGAGGAGGCCTCGGTTGCCAAGCTCTGTGAACATGGCAATAATTATTTATTATTTAGTTTTTATTGCATATCTTGGGGATTGCAGAAGATTCTGTCATTGCTTGAATCAGAAAATGCTGATGCACAAATCCATGCCGTGAAAATAATAGCTAATTTAGCTTGTGAAGAAAGAAACCAGAAGAAGATTGTAGAAGCAGGTGGACTTACGTCCTTGCTTACACTGCTTAAGAACTCAAAAGATGAAACCACACATAGAATTGCAGCAAGCGCCATAGCAAATTTGGCAATGAATGAAACCAATCAAGATCTCATTGCGGCTCAAGGAGGCATTAATTTACTATCAATGACAGCAGCCAATGCTGAAGATCCTCAGACTCTTCGAATGGTTGCTGGAGCAATAGCTAATCTTTTTGGCAATGATAAACTACAGATAAAGATAAGGGATGAAGGTGGTATGAAGGCACTGTTGGGAATGACCAGATGCAAACATCCCGATGTACATACCCAGGTTGCCCGCGCAATAGCCAACTTTGCAAAATGCGAGTCTAAAGCATCTATTCAAGGGATGAAGGTTGGAAGGTCTTCACTTATTGTGGACGGTTTGCTTCCATGGATAGTGCAAAACGCAAGTAATGAAGTCTCGTTAGTGAGGCGTGACATTGAGATTGCTCTCTGCCACTTGGCAAAACATGGTGAGCACTAA 1389 0.3996 MKLENMVKLKQKIDYKSLCRRLDIELDKLTMEYQRKQKEFQEDIEGFTTEGQHQISETQKGYSDSLEKERMKYQKNYNKESIKVLEEKVMENKKKYEDFCMTSTGEMAIVPAEEAVILKKILQKETLKRNATEGELNHLKNQMEEMKMWEASRESDISKLRKMLEDEAQQKEKLKGEIARLQSQLQQLGSEVGKTKQKFRRGGFEKVAGGLDYSPPFQVKHPQQASGNGEEASVAKLCEHGNNYLLFSFYCISWGLQKILSLLESENADAQIHAVKIIANLACEERNQKKIVEAGGLTSLLTLLKNSKDETTHRIAASAIANLAMNETNQDLIAAQGGINLLSMTAANAEDPQTLRMVAGAIANLFGNDKLQIKIRDEGGMKALLGMTRCKHPDVHTQVARAIANFAKCESKASIQGMKVGRSSLIVDGLLPWIVQNASNEVSLVRRDIEIALCHLAKHGEH* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03340 462 SMART arm_5 368 408 IPR000225 GO:0005515
Phac3g03340 462 SMART arm_5 326 367 IPR000225 GO:0005515
Phac3g03340 462 SMART arm_5 283 325 IPR000225 GO:0005515
Phac3g03340 462 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 295 338 IPR000225 GO:0005515
Phac3g03340 462 Coils Coil 19 39 - -
Phac3g03340 462 Gene3D - 63 462 IPR011989 -
Phac3g03340 462 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 254 296 IPR000225 GO:0005515
Phac3g03340 462 PANTHER VACUOLAR PROTEIN 8 255 459 IPR045156 GO:0043495|GO:0071562
Phac3g03340 462 Coils Coil 122 142 - -
Phac3g03340 462 Coils Coil 157 198 - -
Phac3g03340 462 Pfam Armadillo/beta-catenin-like repeat 286 324 IPR000225 GO:0005515
Phac3g03340 462 SUPERFAMILY ARM repeat 254 411 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03340 Phac-Chr3 34136996 34142638 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03340 251 409 U-box Gene Family AT5G62560 25.786 1.98e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03340 - - pvu:PHAVU_003G216300g 783.097