Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03339 ATGAAGCTGGAAAACATGGTAAAATTAAAGCAGAAAATTGATTACAAAAGTTTATGTAGAAGGCTAGACATAGAACTAGACAAACTCACCATGGAATACCAAAGGAAGCAGAAGGAATTTCAGGAGGATATTGAAGGATTCACCACAGAAGGACAGCATCAGATATCAGAGACCCAAAAAGGCTATTCGGATTCACTGGAGAAGGAAAGAATGAAATATCAGAAAAACTATAATAAGGAATCAATTAAGGTGCTAGAAGAGAAGGTGATGGAGAATAAGAAAAAGTACGAGGATTTTTGTATGACATCTACTGGAGAGATGGCCATTGTGCCTGCTGAGGAAGCAGTCATTTTGAAAAAAATACTTCAGAAAGAGACTCTTAAAAGAAATGCTACCGAAGGGGAGCTAAATCATCTGAAAAATCAAATGGAAGAAATGAAAATGTGGGAGGCATCAAGAGAGTCAGATATCTCAAAACTTCGTAAGATGTTGGAAGATGAGGCACAGCAGAAGGAGAAACTCAAAGGAGAAATAGCCAGATTGCAAAGTCAACTGCAGCAATTAGGTTCTGAAGTTGGAAAACAGACAAAACAAAAATTTCGTCGAGGTGGATTTGAGAAAGTTGCTGGTGGTTTAGATTATTCTCCCCCTTTCCAGGTTAAACATCCACAGCAAGCTTCAGGAAATGGAGAGGAGGCCTCGGTTGCCAAGCTCTGTGAACATGGGGGATTGCAGAAGATTCTGTCATTGCTTGAATCAGAAAATGCTGATGCACAAATCCATGCCGTGAAAATAATAGCTAATTTAGCTTGTGAAGAAAGAAACCAGAAGAAGATTGTAGAAGCAGGTGGACTTACGTCCTTGCTTACACTGCTTAAGAACTCAAAAGATGAAACCACACATAGAATTGCAGCAAGCGCCATAGCAAATTTGGCAATGAATGAAACCAATCAAGATCTCATTGCGGCTCAAGGAGGCATTAATTTACTATCAATGACAGCAGCCAATGCTGAAGATCCTCAGACTCTTCGAATGGTTGCTGGAGCAATAGCTAATCTTTTTGGCAATGATAAACTACAGATAAAGATAAGGGATGAAGGTGGTATGAAGGCACTGTTGGGAATGACCAGATGCAAACATCCCGATGTACATACCCAGGTTGCCCGCGCAATAGCCAACTTTGCAAAATGCGAGTCTAAAGCATCTATTCAAGGGATGAAGGTTGGAAGGTCTTCACTTATTGTGGACGGTTTGCTTCCATGGATAGTGCAAAACGCAAGTAATGAAGTCTCGTTAGTGAGGCGTGACATTGAGATTGCTCTCTGCCACTTGGCAAAACATGAAGCAAATGCAAGAGACATGATTAGTGGAGGTGCAATAGGAGAGTTGGTTCGAGTCTCAAGAGATTGTTCAAGAGAAGACATAAGGATTCTTGCACGTGAAACACTAATCTCCAACCCCGCATTCCAACCTGAAATTAGACGTTCGGGACAGAATAATGTTGAATAA 1509 0.4076 MKLENMVKLKQKIDYKSLCRRLDIELDKLTMEYQRKQKEFQEDIEGFTTEGQHQISETQKGYSDSLEKERMKYQKNYNKESIKVLEEKVMENKKKYEDFCMTSTGEMAIVPAEEAVILKKILQKETLKRNATEGELNHLKNQMEEMKMWEASRESDISKLRKMLEDEAQQKEKLKGEIARLQSQLQQLGSEVGKQTKQKFRRGGFEKVAGGLDYSPPFQVKHPQQASGNGEEASVAKLCEHGGLQKILSLLESENADAQIHAVKIIANLACEERNQKKIVEAGGLTSLLTLLKNSKDETTHRIAASAIANLAMNETNQDLIAAQGGINLLSMTAANAEDPQTLRMVAGAIANLFGNDKLQIKIRDEGGMKALLGMTRCKHPDVHTQVARAIANFAKCESKASIQGMKVGRSSLIVDGLLPWIVQNASNEVSLVRRDIEIALCHLAKHEANARDMISGGAIGELVRVSRDCSREDIRILARETLISNPAFQPEIRRSGQNNVE* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03339 502 Gene3D - 115 485 IPR011989 -
Phac3g03339 502 SMART arm_5 356 396 IPR000225 GO:0005515
Phac3g03339 502 SMART arm_5 314 355 IPR000225 GO:0005515
Phac3g03339 502 SMART arm_5 230 271 IPR000225 GO:0005515
Phac3g03339 502 SMART arm_5 272 313 IPR000225 GO:0005515
Phac3g03339 502 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 242 284 IPR000225 GO:0005515
Phac3g03339 502 SUPERFAMILY ARM repeat 231 483 IPR016024 -
Phac3g03339 502 PANTHER VACUOLAR PROTEIN 8 227 488 IPR045156 GO:0043495|GO:0071562
Phac3g03339 502 Coils Coil 19 39 - -
Phac3g03339 502 Coils Coil 122 142 - -
Phac3g03339 502 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 283 326 IPR000225 GO:0005515
Phac3g03339 502 Coils Coil 157 198 - -
Phac3g03339 502 Pfam Armadillo/beta-catenin-like repeat 274 312 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03339 Phac-Chr3 34136369 34142638 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03339 238 397 U-box Gene Family AT5G62560 26.250 8.55e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03339 - - pvu:PHAVU_003G216300g 888.641