Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03338 ATGAAGCTGGAAAACATGGTAAAATTAAAGCAGAAAATTGATTACAAAAGTTTATGTAGAAGGCTAGACATAGAACTAGACAAACTCACCATGGAATACCAAAGGAAGCAGAAGGAATTTCAGGAGGATATTGAAGGATTCACCACAGAAGGACAGCATCAGATATCAGAGACCCAAAAAGGCTATTCGGATTCACTGGAGAAGGAAAGAATGAAATATCAGAAAAACTATAATAAGGAATCAATTAAGGTGCTAGAAGAGAAGGTGATGGAGAATAAGAAAAAGTACGAGGATTTTTGTATGACATCTACTGGAGAGATGGCCATTGTGCCTGCTGAGGAAGCAGTCATTTTGAAAAAAATACTTCAGAAAGAGACTCTTAAAAGAAATGCTACCGAAGGGGAGCTAAATCATCTGAAAAATCAAATGGAAGAAATGAAAATGTGGGAGGCATCAAGAGAGTCAGATATCTCAAAACTTCGTAAGATGTTGGAAGATGAGGCACAGCAGAAGGAGAAACTCAAAGGAGAAATAGCCAGATTGCAAAGTCAACTGCAGCAATTAGGTTCTGAAGTTGGAAAAACAAAACAAAAATTTCGTCGAGGTGGATTTGAGAAAGTTGCTGGTGGTTTAGATTATTCTCCCCCTTTCCAGGTTAAACATCCACAGCAAGCTTCAGGAAATGGAGAGGAGGCCTCGGTTGCCAAGCTCTGTGAACATGGGGGATTGCAGAAGATTCTGTCATTGCTTGAATCAGAAAATGCTGATGCACAAATCCATGCCGTGAAAATAATAGCTAATTTAGCTTGTGAAGAAAGAAACCAGAAGAAGATTGTAGAAGCAGGTGGACTTACGTCCTTGCTTACACTGCTTAAGAACTCAAAAGATGAAACCACACATAGAATTGCAGCAAGCGCCATAGCAAATTTGGCAATGAATGAAACCAATCAAGATCTCATTGCGGCTCAAGGAGGCATTAATTTACTATCAATGACAGCAGCCAATGCTGAAGATCCTCAGACTCTTCGAATGGTTGCTGGAGCAATAGCTAATCTTTTTGGCAATGATAAACTACAGATAAAGATAAGGGATGAAGGTGGTATGAAGGCACTGTTGGGAATGACCAGATGCAAACATCCCGATGTACATACCCAGGTTGCCCGCGCAATAGCCAACTTTGCAAAATGCGAGTCTAAAGCATCTATTCAAGGGATGAAGGTTGGAAGGTCTTCACTTATTGTGGACGGTTTGCTTCCATGGATAGTGCAAAACGCAAGTAATGAAGTCTCGTTAGTGAGGCGTGACATTGAGATTGCTCTCTGCCACTTGGCAAAACATGAAGCAAATGCAAGAGACATGATTAGTGGAGGTGCAATAGGAGAGTTGGTTCGAGTCTCAAGAGATTGTTCAAGAGAAGACATAAGGATTCTTGCACGTGAAACACTAATCTCCAACCCCGCATTCCAACCTGAAATTAGACGTTCGGGACAGAATAATGTTGAATAA 1506 0.407 MKLENMVKLKQKIDYKSLCRRLDIELDKLTMEYQRKQKEFQEDIEGFTTEGQHQISETQKGYSDSLEKERMKYQKNYNKESIKVLEEKVMENKKKYEDFCMTSTGEMAIVPAEEAVILKKILQKETLKRNATEGELNHLKNQMEEMKMWEASRESDISKLRKMLEDEAQQKEKLKGEIARLQSQLQQLGSEVGKTKQKFRRGGFEKVAGGLDYSPPFQVKHPQQASGNGEEASVAKLCEHGGLQKILSLLESENADAQIHAVKIIANLACEERNQKKIVEAGGLTSLLTLLKNSKDETTHRIAASAIANLAMNETNQDLIAAQGGINLLSMTAANAEDPQTLRMVAGAIANLFGNDKLQIKIRDEGGMKALLGMTRCKHPDVHTQVARAIANFAKCESKASIQGMKVGRSSLIVDGLLPWIVQNASNEVSLVRRDIEIALCHLAKHEANARDMISGGAIGELVRVSRDCSREDIRILARETLISNPAFQPEIRRSGQNNVE* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03338 501 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 282 325 IPR000225 GO:0005515
Phac3g03338 501 SUPERFAMILY ARM repeat 230 482 IPR016024 -
Phac3g03338 501 Pfam Armadillo/beta-catenin-like repeat 273 311 IPR000225 GO:0005515
Phac3g03338 501 Coils Coil 19 39 - -
Phac3g03338 501 Coils Coil 122 142 - -
Phac3g03338 501 SMART arm_5 229 270 IPR000225 GO:0005515
Phac3g03338 501 SMART arm_5 313 354 IPR000225 GO:0005515
Phac3g03338 501 SMART arm_5 271 312 IPR000225 GO:0005515
Phac3g03338 501 SMART arm_5 355 395 IPR000225 GO:0005515
Phac3g03338 501 Coils Coil 157 198 - -
Phac3g03338 501 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 241 283 IPR000225 GO:0005515
Phac3g03338 501 PANTHER VACUOLAR PROTEIN 8 226 487 IPR045156 GO:0043495|GO:0071562
Phac3g03338 501 Gene3D - 100 484 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03338 Phac-Chr3 34136369 34142638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03338 237 396 U-box Gene Family AT5G62560 26.250 8.30e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03338 - - pvu:PHAVU_003G216300g 893.264