Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03289 ATGGCTGTGTCTCTTCAACATTGTAGCTTCTTGTTGATTTCGATCTTCATAATCATGGGAAAACCAGCAACAGTAGCGGCTTTATTTCAGCCTAGTCAATGGATACCAGCCCATGCCACATTTTATGGTGACGAGAGTGCTTCTGCCACCATGGGAGGAGCATGTGGATATGGAAATTTGTTGATAAACGGTTATGGGACAGACACAGCAGCTCTGAGCTCGACATTGTTCAACGATGGATATGCATGTGGAACATGTTACGAGATAAAGTGTGTCCAATCGAGTGCCTGCTTCACCAATGTGGTTTCCACCACAGTGACTGCCACCAATATTTGCCCTCCTAATTGGGCCGAACCCTCTGATAATGGAGGGTGGTGCAACCCACCCCGTTCACATTTTGATATGTCCAAGCCCGCTTTCATGAAAATTGCACAGTGGAAAGCTGGAATCGTTCCTGTTATGTACCGCAGAGTGGCTTGCGTGAAGAGTGCGGGGCTACGATTCTCTTTCCAAGGAAATGGGTATTGGTTACTAGTGTATGTGATGAATGTGGGAGGAGGAGGAGACATTGCGAACATGTGGGTGAAAGGAAGTGGACCTGAGTGGATCAGCATGAGCCACAATTGGGGTGCTTCTTACCAAGCATTTGCAACGTTGAGTGGTCAATCTCTTTCCTTTAAGGCTACTTCTTACACTACCAAGGAGACTATAATAGCTTGGAATGTTGCTCCCACCAACTGGGGCGTAGGACTAACTTATTCCTCCCAGGTCAACTTCAGTTAA 783 0.4674 MAVSLQHCSFLLISIFIIMGKPATVAALFQPSQWIPAHATFYGDESASATMGGACGYGNLLINGYGTDTAALSSTLFNDGYACGTCYEIKCVQSSACFTNVVSTTVTATNICPPNWAEPSDNGGWCNPPRSHFDMSKPAFMKIAQWKAGIVPVMYRRVACVKSAGLRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSGPEWISMSHNWGASYQAFATLSGQSLSFKATSYTTKETIIAWNVAPTNWGVGLTYSSQVNFS* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03289 260 PANTHER EXPANSIN-A15 24 255 IPR002963 GO:0009664
Phac3g03289 260 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Phac3g03289 260 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Phac3g03289 260 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Phac3g03289 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Phac3g03289 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Phac3g03289 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Phac3g03289 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Phac3g03289 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 255 IPR007117 -
Phac3g03289 260 SMART dpbb_1 69 155 IPR007112 -
Phac3g03289 260 Gene3D - 165 260 IPR036749 -
Phac3g03289 260 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Phac3g03289 260 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Phac3g03289 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Phac3g03289 260 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Phac3g03289 260 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Phac3g03289 260 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Phac3g03289 260 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Phac3g03289 260 SUPERFAMILY PHL pollen allergen 163 255 IPR036749 -
Phac3g03289 260 Gene3D - 20 160 IPR036908 -
Phac3g03289 260 SUPERFAMILY Barwin-like endoglucanases 26 183 IPR036908 -
Phac3g03289 260 CDD DPBB_EXPA_N 33 160 - -
Phac3g03289 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 165 IPR007112 -
Phac3g03289 260 Pfam Lytic transglycolase 69 155 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03289 Phac-Chr3 33785510 33787477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03289 11 259 Expansin Gene Family AT1G12560 65.060 3.97e-120 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03289 - - gmx:100781459 476.478