Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03284 ATGGTGAGGGGGAAAACTCAGATGAAGCGCATCGAAAACGAAACCAGTAGGCAAGTCACCTTCTCCAAGAGAAGGAACGGCTTGCTTAAGAAGGCCTTTGAGCTTTCGGTGCTGTGCGATGCTGAAGTCGCTCTCATCATCTTCTCCACCAGAGGGAGGCTTTACGAGTTCTCCAGTTCAACCTCAAGATTGATTTTAATGGATCCTTTCAAAAGGCTTGCTGGCTTAAGGAATATAATATTAGAGAAAAAATCATCATCGAATGTCAATTGTGAAGCTGGATAA 285 0.4386 MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGRLYEFSSSTSRLILMDPFKRLAGLRNIILEKKSSSNVNCEAG* 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03284 94 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac3g03284 94 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phac3g03284 94 Gene3D - 13 73 IPR036879 GO:0003677|GO:0046983
Phac3g03284 94 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac3g03284 94 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac3g03284 94 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac3g03284 94 CDD MADS_MEF2_like 3 67 IPR033896 GO:0000977|GO:0045944
Phac3g03284 94 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac3g03284 94 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac3g03284 94 SUPERFAMILY SRF-like 3 70 IPR036879 GO:0003677|GO:0046983
Phac3g03284 94 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 70 - -
Phac3g03284 94 FunFam Agamous-like MADS-box protein AGL13 13 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03284 Phac-Chr3 33756927 33758022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03284 1 62 MADS-box Gene Family AT4G11880 91.935 3.07e-35 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phac3g03284 SRF-TF 6.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03284 - - vum:124828919 122.864