Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03273 ATGGCCTCATCGTCATCTTCATCAAAGAGACATCCACTGTACCATGGAATCCGTTGCCGCGGAGGAAAATGGGTCACTGAAATCCGTGAGCCACGTAAGACCAACCGAATATGGTTGGGCACGTTCCTCACGCCGGAGATGGCCGCCGCCGCCTATGACGTGGCGGCGTTGGCCCTGAAAGGAGGGGAAGCGGTTCTCAACTTCCCGGACTCAATTGGCAAGTATCCAGTTCCCGCGTCCAAATCCCCTGCGGACATCCGCAGCGCAGCCATTGCTGCAGCCGAACTCATGAAGCCTGAAGCCAGCCACAACAACGCTAATGCAGTAGCTCAGTCTGATAACACAGAGGGTGAAAGTTACTATAATGTTGCTGCTCCTTTGAATGAAACTGAGTTTGTCGACGAGGAAGCCATATTCTCCATGCCGAGTTTGTTGATCGACATGGCTGAGGGAATGTTGCTAACCCCTCCCAGAATGAGCTCACCCTCTGATTACTGGACCGAGAATTCTGGTGGAGAAAATTTGTGGAACTTTTGA 537 0.5233 MASSSSSSKRHPLYHGIRCRGGKWVTEIREPRKTNRIWLGTFLTPEMAAAAYDVAALALKGGEAVLNFPDSIGKYPVPASKSPADIRSAAIAAAELMKPEASHNNANAVAQSDNTEGESYYNVAAPLNETEFVDEEAIFSMPSLLIDMAEGMLLTPPRMSSPSDYWTENSGGENLWNF* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03273 178 Gene3D AP2/ERF domain 13 70 IPR036955 GO:0003700|GO:0006355
Phac3g03273 178 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 165 IPR045277 GO:0003700
Phac3g03273 178 SMART rav1_2 13 77 IPR001471 GO:0003700|GO:0006355
Phac3g03273 178 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Phac3g03273 178 SUPERFAMILY DNA-binding domain 13 71 IPR016177 GO:0003677
Phac3g03273 178 Pfam AP2 domain 14 61 IPR001471 GO:0003700|GO:0006355
Phac3g03273 178 ProSiteProfiles AP2/ERF domain profile. 13 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03273 Phac-Chr3 33600227 33601431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03273 8 178 AP2-EREBP Transcription Factor Family AT5G52020 51.724 4.06e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phac3g03273 AP2 2.3e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03273 - - vra:106768065 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g03273 3 33600227 33601431 Phac3g03273 3 33600227 33601431 ECH