Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03260 ATGGCTACCACAAGGTCACCTAATCATTCTTCCGAGGAAGGCGCCGATCCGACGCCGTTCCTCGGCACTTCTTCCGACGAATCTAACTCCGGCCGCCGTCTCCTCCGCCGCCCGAGCCTCCGCGAGGCGGCGCGCTTCCTGCGGCAGGCGAGCGGCCGCCGCTTGATGCGCGAGCCGTCGATGGTGGTGCGGGAGGCGGCGGCGGAGCAATTGGAAGAAAGACAGAGCGATTGGGCCTATTCTAAGCCCGTGGTAGTCTTGGATATTCTCTGGAACTTCGCGTTCGTCGTAGCGGCCACCACTGTCTTGATTCTCGCTCGCAACGAGAATCCGAATATGCCTCTGAGGTTGTGGATTGTAGGCTACGCTATGCAGTGCGTTCTTCACGTCGCGTGCGTCTGCGTTGAGTACCGGAGGCGCCAGCGCCGCCGTGAACAGTCCAGCCTCGCCGTCGCTGTTGGTGGCAGCGGGGATTTGAGTTCGGCTTCGATGGAAGGCTCTAGACACTACGTGTCGTTGCCGCAGCTCGAGGACGACGGTATAAGTATGGCCAAGCATTTGGAATCAGCCAACACAATGTTTTCATTCATTTGGTGGGTTGTTGGATTCTATTGGATATCAGCTGACAATGAAGCTTTGGTCCAAGATTCTCCTCTGCTTTACTGGTTATGTATAGCCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGCATTGCACTAGCATGCATAATTGGTATAGCTGTTTGCTGTTGTCTTCCATGTATCATTGCACTCCTGTATGCAGTTGCAGACCAGGAAGGGGCATCAAAAGAAGACATTGAGCAATTGTCAAAATTCAAGTTCCAAAGAACCGAAACTAATGAGAAACTTGCTGGGAATACACAAGGAGCTGCTGGAGGGATAATGATGGAATGCGATACTGATTCTCCCATTGAACATGTTCTTTCTGATGAGGATGCGGAATGTTGCATCTGTCTTTCTGCTTATGATGACGGGGTTGAACTTAGGCAACTTCCTTGTGGCCACCATTTTCACTGTTCCTGTGTGGACAAATGGCTGCATATCAATGCTACTTGCCCCCTCTGCAAGTACAATATCTTGAAAAGTACCAGTCATGGTCAAGACGAAGTTTAG 1137 0.5145 MATTRSPNHSSEEGADPTPFLGTSSDESNSGRRLLRRPSLREAARFLRQASGRRLMREPSMVVREAAAEQLEERQSDWAYSKPVVVLDILWNFAFVVAATTVLILARNENPNMPLRLWIVGYAMQCVLHVACVCVEYRRRQRRREQSSLAVAVGGSGDLSSASMEGSRHYVSLPQLEDDGISMAKHLESANTMFSFIWWVVGFYWISADNEALVQDSPLLYWLCIAFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFQRTETNEKLAGNTQGAAGGIMMECDTDSPIEHVLSDEDAECCICLSAYDDGVELRQLPCGHHFHCSCVDKWLHINATCPLCKYNILKSTSHGQDEV* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03260 378 MobiDBLite consensus disorder prediction 1 37 - -
Phac3g03260 378 CDD RING-H2_RNF6-like 322 364 - -
Phac3g03260 378 ProSiteProfiles Zinc finger RING-type profile. 323 364 IPR001841 -
Phac3g03260 378 SMART ring_2 323 363 IPR001841 -
Phac3g03260 378 FunFam E3 ubiquitin-protein ligase At1g12760 309 374 - -
Phac3g03260 378 PANTHER TARGET OF ERK KINASE MPK-1 51 368 - -
Phac3g03260 378 MobiDBLite consensus disorder prediction 1 29 - -
Phac3g03260 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 377 IPR013083 -
Phac3g03260 378 Pfam Ring finger domain 322 364 IPR001841 -
Phac3g03260 378 SUPERFAMILY RING/U-box 313 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03260 Phac-Chr3 33473617 33478591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03260 1 373 C3H Transcription Factor Family AT1G68070 47.340 6.41e-118 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03260 - - gmx:100779757 685.256