Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03214 ATGGCAACCGCTTCCCGCTTGTTCCTGATCCCGGCGGCGAGGCCCGCTCTCGCCAAAACCATATTCTTCATGTCCTCTTGTTCAGCTCGCACGCTCGAACCGTGCGAGCCGTCACATTCCCCTGCGCGCTCGGAGGAAGAATCGCGAAACGTGAGGGTTTGGGCATGGTGGGACTTCAAGAACTGCCACGTGCCCCTGGGTTTTGACGCTTCCAAAGTCGCACCGGCAATAATGGAGGCAGTGAGAGCAAACGGAATCAAAGGCCCTCTCAACATCACCGCTTTCGGCGACGTTCAACGACTCCCCCGGGCACACCAGGAAGCACTCGCCTATACTGGCGTTCGCTTTATCCACGTCTCCGATGAGGGAAGAAACAGTATCGATATTCTCGTTGACCTAATGTACTGGGTTTCTCAGAACCCTCCACCGGCGCACATATTTTTGATATCCGGCGATAGAGACTTCGCTGGCACGTTACACCGCTTGAGAATGAGTAATTACAATATCTTGCTCGCTACGCCGGAGAAAACTCCCAGTGTTCTCCACAGTGCTGCTACTATAGCCTGGCTGTGGCCTTCGTTGCTCAACGGAGAAAATCTTTCTGGAAAGGTCCTCAACCACCCTCCTGATGGGCCTTTTGGCTCTTGGTATGGAAGCTACAACGAGCCGGTGACGGTGGAGGATCCGGCGACGGAGGAACCGGTCTCAGTTGCAGCTCCGCAGGCTACCTCGTTACCCAATGTGGAGGTCTATGGGCCTTCCCTGAGCTCGGTTCCTAAGTCAGTTGTGAGGAAGGTTTGGAATATTTTGAGTTTGCATCCAGAAGGGATATACATTACCAATCTTCGCGCTGAGTTGGTGAAAAGTGATGTCCGTTTGGATAGGAATTTGTATGGACATAAAAAGTTTTCCCGCTTTCTGTTGTCGTTGCCACGGGTAGATCTTCGGGCCGGTGGTGATGGTCATTTTAGTGTACATTTGGTTCCTTTGGAATCCATGGAACCATGTGAGAACAGCTCTTTGGAATCAACAATTTCTGGTGCTAAGAATGAGGAGAAAGGATGTGCAGCGGCTCCAAAGCTAAATGGTGAGGGTAAAAGTAAGGTTAGGGATGCTGATGGGAAATTGTCAACTGCTCCGGTCTTTGAAAGGTGTATGGCCAACGATTTAAAATCAGTACAACCGGGGACTTCAAAAGGGAGACCTGTTGGGGAAAATGAGTTGCAGAAGTCTGCTGTGGCTTGTGACAGGTTTGTGGATGTTGCTAATGCTCCTCAGTCAGAAGCTCAACTGCCACACAAGGTCACCAAAGATTCCAAAACTAAGATGGATACCTTAAACAAGAGTTTTAAAAAATTGTCTGATAATAACACTGTTAGGTCTAAAGTTGCTGGTATGGAAAAACATACAACTAAAGAAAATCACTCTGCTAGAAATGGTCAATCGATGGTGCAAAGCAATGTTATGGCAAATTATGAGTCTGGTAATATTGAAGCAAAGAATAAATGTGAGAATCGAACTAGAAAGGAGGTTGACGAAGTTTTTCCAAGCCTATCTTCACTAATTGATGATGGCTCTGAGGCTGCCCAAAAGCCTAGCGGAAGTGCTGAAACTAATAAAAGAAGTCCAACTCTGTTTCACTGGATTAGAAGGTGGTGGCCATTTGGGAAAAACAATGAAAAGTATGATGATTTGACGGTTCATCAGAGCGAGGGGGTTAGTCATGTTGAGGATTCGAAGTTATCTGAACTGGAGAAGACACTTAGTCAGTCTGAAGAGGCCAAATCATCTGAACTGGATCATACGTTAAGTCAATCAGAAGAGCCCAAGTTATCAGAACTGGATCAGAATGTTAGTCATTTCGGAAAGCCTGAGTTATTTTCCAGTCCTTCCTTTTGGAATGATATGGAATCTTCTATTTTTTCACCCAAAGGATCACTTCTTTTCTCCCATTCAAGAAGCAGGGAGGATGTGGCGCAAAGATTACAGAATGCAGGACCCCTGCTTCTCAGATCACTCCCCGAAAAAGATATCCTTCAATTGGTTGAAATGTTAATAGAAGACAAAAAATGGTTGGAGGAAAGGCCCTCCCAAACATTTCCTTTTAAGCTAATTCAGCCAGTTCATAAGAATTTATCGGTGGACCAATCCCATGTTACCAATGGTTTGAGATCTCTCTTTCTAAGCAGAACATCACAATCGAACTTGCAAAAATCTTTAGAACATGATGTGGGGAAACACAATCAGAGTGTTTCTCATACACGCATTTCTGTGGCAGCGGCTGAAACAAAATATATTGAGAGATCTAGAAATGATATATTAGATGACTGTCAGAAACTTGTGAATGAGATAGTAAGGGAACACCCAGAGGGATATAATATTGGTTCTTTCCGAAGACTATTTGTTGATAGGTATGGCTATCATCTTGATATCCAGAAGCTTGGTTATCAAAAATTGGCAGCCTTGTTACAGATAATGCCTGGGGTTAAATTTGAGTCCACTTACATTTTTCCTTCTGTTCCTGCTGTCTGTGATTCTAATTTCGATAATTCTATCCCCAAAACTCAAGCAACCACTGATAATCATGCAGTCTCCAACTCTGATAGTGAATTATCTGAGTCAACCTCTGAAGATCATGGCACGGAATCTCCGTGGGAGGAGTTAGGTCCTGTTTCTAACAAAAATTCCGACAAGACTGGTTTGGGTTTAAATTCATGTCAGAAAGTTATGGAACTGGATACATCAAAATCAAAGCATCCTGGTTATGAACTTGTTGTATCAGATGACGATGCTTCTGCATCTGAAGGAGATGACTCTTGTTTAACTCAATCTGAAGAGCAGAGGAAGTCAAATTGTAATGAACAGGACAGTTCGTTTTGGCAAGCTATGGATTTCTGGCACAGCTGCAAGGAAGAAGAGAATAGTGTCAAGAAGTCGGACAAAGTTGACAGCTTGGGTGCTTCTCTGGTTGATATTTTAGATTCATCCACTGAGTCGACCAGTGGTACCATTTCTGAAATTCCTTCATCAAATTACAGAGATAATATTGTCAATAAGTCAGACAATGTTGACAGTTTGAATGGTTCTCTGGCTGATATTTTTAATTCATCCCCTGAACCGACCTGGGTTACCCCTTCCAAAACATCTACATCAAATCACAGAGAGAAACAAAGATCTCACAAGAACTATTCCTTCGTTGCTGATCCAGTCTTACCTAACAAGGACAAGCTGATTGGTGACTTCAAGAAAACAGATGAGTCAAAGATGCAAAAACAGAGGAGTTCCTTGTGCAAGTAG 3297 0.4401 MATASRLFLIPAARPALAKTIFFMSSCSARTLEPCEPSHSPARSEEESRNVRVWAWWDFKNCHVPLGFDASKVAPAIMEAVRANGIKGPLNITAFGDVQRLPRAHQEALAYTGVRFIHVSDEGRNSIDILVDLMYWVSQNPPPAHIFLISGDRDFAGTLHRLRMSNYNILLATPEKTPSVLHSAATIAWLWPSLLNGENLSGKVLNHPPDGPFGSWYGSYNEPVTVEDPATEEPVSVAAPQATSLPNVEVYGPSLSSVPKSVVRKVWNILSLHPEGIYITNLRAELVKSDVRLDRNLYGHKKFSRFLLSLPRVDLRAGGDGHFSVHLVPLESMEPCENSSLESTISGAKNEEKGCAAAPKLNGEGKSKVRDADGKLSTAPVFERCMANDLKSVQPGTSKGRPVGENELQKSAVACDRFVDVANAPQSEAQLPHKVTKDSKTKMDTLNKSFKKLSDNNTVRSKVAGMEKHTTKENHSARNGQSMVQSNVMANYESGNIEAKNKCENRTRKEVDEVFPSLSSLIDDGSEAAQKPSGSAETNKRSPTLFHWIRRWWPFGKNNEKYDDLTVHQSEGVSHVEDSKLSELEKTLSQSEEAKSSELDHTLSQSEEPKLSELDQNVSHFGKPELFSSPSFWNDMESSIFSPKGSLLFSHSRSREDVAQRLQNAGPLLLRSLPEKDILQLVEMLIEDKKWLEERPSQTFPFKLIQPVHKNLSVDQSHVTNGLRSLFLSRTSQSNLQKSLEHDVGKHNQSVSHTRISVAAAETKYIERSRNDILDDCQKLVNEIVREHPEGYNIGSFRRLFVDRYGYHLDIQKLGYQKLAALLQIMPGVKFESTYIFPSVPAVCDSNFDNSIPKTQATTDNHAVSNSDSELSESTSEDHGTESPWEELGPVSNKNSDKTGLGLNSCQKVMELDTSKSKHPGYELVVSDDDASASEGDDSCLTQSEEQRKSNCNEQDSSFWQAMDFWHSCKEEENSVKKSDKVDSLGASLVDILDSSTESTSGTISEIPSSNYRDNIVNKSDNVDSLNGSLADIFNSSPEPTWVTPSKTSTSNHREKQRSHKNYSFVADPVLPNKDKLIGDFKKTDESKMQKQRSSLCK* 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03214 1098 MobiDBLite consensus disorder prediction 854 902 - -
Phac3g03214 1098 MobiDBLite consensus disorder prediction 854 871 - -
Phac3g03214 1098 CDD PIN_limkain_b1_N_like 52 174 - -
Phac3g03214 1098 ProSiteProfiles OST-type HTH domain profile. 773 847 IPR025605 -
Phac3g03214 1098 Pfam OST-HTH/LOTUS domain 265 322 IPR025605 -
Phac3g03214 1098 Pfam OST-HTH/LOTUS domain 775 828 IPR025605 -
Phac3g03214 1098 MobiDBLite consensus disorder prediction 519 540 - -
Phac3g03214 1098 MobiDBLite consensus disorder prediction 1034 1098 - -
Phac3g03214 1098 MobiDBLite consensus disorder prediction 888 902 - -
Phac3g03214 1098 Pfam OST-HTH Associated domain 653 702 IPR025677 -
Phac3g03214 1098 Pfam NYN domain 52 185 IPR021139 GO:0004540
Phac3g03214 1098 MobiDBLite consensus disorder prediction 523 540 - -
Phac3g03214 1098 Gene3D - 768 835 IPR041966 -
Phac3g03214 1098 PANTHER LIMKAIN B LKAP 40 783 IPR024768 GO:0005777|GO:0010468
Phac3g03214 1098 MobiDBLite consensus disorder prediction 928 954 - -
Phac3g03214 1098 MobiDBLite consensus disorder prediction 571 610 - -
Phac3g03214 1098 MobiDBLite consensus disorder prediction 1075 1092 - -
Phac3g03214 1098 CDD LOTUS 774 829 - -
Phac3g03214 1098 MobiDBLite consensus disorder prediction 571 608 - -
Phac3g03214 1098 ProSiteProfiles OST-type HTH domain profile. 258 329 IPR025605 -
Phac3g03214 1098 MobiDBLite consensus disorder prediction 1034 1050 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03214 Phac-Chr3 33132727 33136996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03214 55 197 C2H2 Transcription Factor Family AT5G61190 44.138 4.34e-34 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03214 - - pvu:PHAVU_003G208800g 2079.68