Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03213 ATGTACTGGGTTTCTCAGAACCCTCCACCGGCGCACATATTTTTGATATCCGGCGATAGAGACTTCGCTGGCACGTTACACCGCTTGAGAATGAGTAATTACAATATCTTGCTCGCTACGCCGGAGAAAACTCCCAGTGTTCTCCACAGTGCTGCTACTATAGCCTGGCTGTGGCCTTCGTTGCTCAACGGAGAAAATCTTTCTGGAAAGGTCCTCAACCACCCTCCTGATGGGCCTTTTGGCTCTTGGTATGGAAGCTACAACGAGCCGGTGACGGTGGAGGATCCGGCGACGGAGGAACCGGTCTCAGTTGCAGCTCCGCAGGCTACCTCGTTACCCAATGTGGAGGTCTATGGGCCTTCCCTGAGCTCGGTTCCTAAGTCAGTTGTGAGGAAGGTTTGGAATATTTTGAGTTTGCATCCAGAAGGGATATACATTACCAATCTTCGCGCTGAGTTGGTGAAAAGTGATGTCCGTTTGGATAGGAATTTGTATGGACATAAAAAGTTTTCCCGCTTTCTGTTGTCGTTGCCACGGGTAGATCTTCGGGCCGGTGGTGATGGTCATTTTAGTGTACATTTGGTTCCTTTGGAATCCATGGAACCATGTGAGAACAGCTCTTTGGAATCAACAATTTCTGGTGCTAAGAATGAGGAGAAAGGATGTGCAGCGGCTCCAAAGCTAAATGGTGAGGGTAAAAGTAAGGTTAGGGATGCTGATGGGAAATTGTCAACTGCTCCGGTCTTTGAAAGGTGTATGGCCAACGATTTAAAATCAGTACAACCGGGGACTTCAAAAGGGAGACCTGTTGGGGAAAATGAGTTGCAGAAGTCTGCTGTGGCTTGTGACAGGTTTGTGGATGTTGCTAATGCTCCTCAGTCAGAAGCTCAACTGCCACACAAGGTCACCAAAGATTCCAAAACTAAGATGGATACCTTAAACAAGAGTTTTAAAAAATTGTCTGATAATAACACTGTTAGGTCTAAAGTTGCTGGTATGGAAAAACATACAACTAAAGAAAATCACTCTGCTAGAAATGGTCAATCGATGGTGCAAAGCAATGTTATGGCAAATTATGAGTCTGGTAATATTGAAGCAAAGAATAAATGTGAGAATCGAACTAGAAAGGAGGTTGACGAAGTTTTTCCAAGCCTATCTTCACTAATTGATGATGGCTCTGAGGCTGCCCAAAAGCCTAGCGGAAGTGCTGAAACTAATAAAAGAAGTCCAACTCTGTTTCACTGGATTAGAAGGTGGTGGCCATTTGGGAAAAACAATGAAAAGTATGATGATTTGACGGTTCATCAGAGCGAGGGGGTTAGTCATGTTGAGGATTCGAAGTTATCTGAACTGGAGAAGACACTTAGTCAGTCTGAAGAGGCCAAATCATCTGAACTGGATCATACGTTAAGTCAATCAGAAGAGCCCAAGTTATCAGAACTGGATCAGAATGTTAGTCATTTCGGAAAGCCTGAGTTATTTTCCAGTCCTTCCTTTTGGAATGATATGGAATCTTCTATTTTTTCACCCAAAGGATCACTTCTTTTCTCCCATTCAAGAAGCAGGGAGGATGTGGCGCAAAGATTACAGAATGCAGGACCCCTGCTTCTCAGATCACTCCCCGAAAAAGATATCCTTCAATTGGTTGAAATGTTAATAGAAGACAAAAAATGGTTGGAGGAAAGGCCCTCCCAAACATTTCCTTTTAAGCTAATTCAGCCAGTTCATAAGAATTTATCGGTGGACCAATCCCATGTTACCAATGGTTTGAGATCTCTCTTTCTAAGCAGAACATCACAATCGAACTTGCAAAAATCTTTAGAACATGATGTGGGGAAACACAATCAGAGTGTTTCTCATACACGCATTTCTGTGGCAGCGGCTGAAACAAAATATATTGAGAGATCTAGAAATGATATATTAGATGACTGTCAGAAACTTGTGAATGAGATAGTAAGGGAACACCCAGAGGGATATAATATTGGTTCTTTCCGAAGACTATTTGTTGATAGGTATGGCTATCATCTTGATATCCAGAAGCTTGGTTATCAAAAATTGGCAGCCTTGTTACAGATAATGCCTGGGGTTAAATTTGAGTCCACTTACATTTTTCCTTCTGTTCCTGCTGTCTGTGATTCTAATTTCGATAATTCTATCCCCAAAACTCAAGCAACCACTGATAATCATGCAGTCTCCAACTCTGATAGTGAATTATCTGAGTCAACCTCTGAAGATCATGGCACGGAATCTCCGTGGGAGGAGTTAGGTCCTGTTTCTAACAAAAATTCCGACAAGACTGGTTTGGGTTTAAATTCATGTCAGAAAGTTATGGAACTGGATACATCAAAATCAAAGCATCCTGGTTATGAACTTGTTGTATCAGATGACGATGCTTCTGCATCTGAAGGAGATGACTCTTGTTTAACTCAATCTGAAGAGCAGAGGAAGTCAAATTGTAATGAACAGGACAGTTCGTTTTGGCAAGCTATGGATTTCTGGCACAGCTGCAAGGAAGAAGAGAATAGTGTCAAGAAGTCGGACAAAGTTGACAGCTTGGGTGCTTCTCTGGTTGATATTTTAGATTCATCCACTGAGTCGACCAGTGGTACCATTTCTGAAATTCCTTCATCAAATTACAGAGATAATATTGTCAATAAGTCAGACAATGTTGACAGTTTGAATGGTTCTCTGGCTGATATTTTTAATTCATCCCCTGAACCGACCTGGGTTACCCCTTCCAAAACATCTACATCAAATCACAGAGAGAAACAAAGATCTCACAAGAACTATTCCTTCGTTGCTGATCCAGTCTTACCTAACAAGGACAAGCTGATTGGTGACTTCAAGAAAACAGATGAGTCAAAGATGCAAAAACAGAGGAGTTCCTTGTGCAAGTAG 2898 0.4224 MYWVSQNPPPAHIFLISGDRDFAGTLHRLRMSNYNILLATPEKTPSVLHSAATIAWLWPSLLNGENLSGKVLNHPPDGPFGSWYGSYNEPVTVEDPATEEPVSVAAPQATSLPNVEVYGPSLSSVPKSVVRKVWNILSLHPEGIYITNLRAELVKSDVRLDRNLYGHKKFSRFLLSLPRVDLRAGGDGHFSVHLVPLESMEPCENSSLESTISGAKNEEKGCAAAPKLNGEGKSKVRDADGKLSTAPVFERCMANDLKSVQPGTSKGRPVGENELQKSAVACDRFVDVANAPQSEAQLPHKVTKDSKTKMDTLNKSFKKLSDNNTVRSKVAGMEKHTTKENHSARNGQSMVQSNVMANYESGNIEAKNKCENRTRKEVDEVFPSLSSLIDDGSEAAQKPSGSAETNKRSPTLFHWIRRWWPFGKNNEKYDDLTVHQSEGVSHVEDSKLSELEKTLSQSEEAKSSELDHTLSQSEEPKLSELDQNVSHFGKPELFSSPSFWNDMESSIFSPKGSLLFSHSRSREDVAQRLQNAGPLLLRSLPEKDILQLVEMLIEDKKWLEERPSQTFPFKLIQPVHKNLSVDQSHVTNGLRSLFLSRTSQSNLQKSLEHDVGKHNQSVSHTRISVAAAETKYIERSRNDILDDCQKLVNEIVREHPEGYNIGSFRRLFVDRYGYHLDIQKLGYQKLAALLQIMPGVKFESTYIFPSVPAVCDSNFDNSIPKTQATTDNHAVSNSDSELSESTSEDHGTESPWEELGPVSNKNSDKTGLGLNSCQKVMELDTSKSKHPGYELVVSDDDASASEGDDSCLTQSEEQRKSNCNEQDSSFWQAMDFWHSCKEEENSVKKSDKVDSLGASLVDILDSSTESTSGTISEIPSSNYRDNIVNKSDNVDSLNGSLADIFNSSPEPTWVTPSKTSTSNHREKQRSHKNYSFVADPVLPNKDKLIGDFKKTDESKMQKQRSSLCK* 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03213 965 ProSiteProfiles OST-type HTH domain profile. 640 714 IPR025605 -
Phac3g03213 965 Gene3D - 635 702 IPR041966 -
Phac3g03213 965 MobiDBLite consensus disorder prediction 721 769 - -
Phac3g03213 965 Pfam NYN domain 1 52 IPR021139 GO:0004540
Phac3g03213 965 MobiDBLite consensus disorder prediction 438 475 - -
Phac3g03213 965 Pfam OST-HTH Associated domain 520 569 IPR025677 -
Phac3g03213 965 MobiDBLite consensus disorder prediction 901 917 - -
Phac3g03213 965 MobiDBLite consensus disorder prediction 942 959 - -
Phac3g03213 965 CDD LOTUS 641 696 - -
Phac3g03213 965 MobiDBLite consensus disorder prediction 795 821 - -
Phac3g03213 965 MobiDBLite consensus disorder prediction 755 769 - -
Phac3g03213 965 MobiDBLite consensus disorder prediction 438 477 - -
Phac3g03213 965 ProSiteProfiles OST-type HTH domain profile. 125 196 IPR025605 -
Phac3g03213 965 PANTHER LIMKAIN B LKAP 1 650 IPR024768 GO:0005777|GO:0010468
Phac3g03213 965 MobiDBLite consensus disorder prediction 390 407 - -
Phac3g03213 965 Pfam OST-HTH/LOTUS domain 132 189 IPR025605 -
Phac3g03213 965 Pfam OST-HTH/LOTUS domain 642 695 IPR025605 -
Phac3g03213 965 MobiDBLite consensus disorder prediction 721 738 - -
Phac3g03213 965 MobiDBLite consensus disorder prediction 901 965 - -
Phac3g03213 965 MobiDBLite consensus disorder prediction 386 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03213 Phac-Chr3 33132727 33136996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03213 1 64 C2H2 Transcription Factor Family AT5G61190 51.562 8.89e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03213 - - pvu:PHAVU_003G208800g 1815.05