Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03202 ATGGCGGGTTCGGAGGAAGTATTGCCGTGGCTGAAGTCGCTGCCGGTGGCGCCTGAGTACCGCCCAACCACGGCGGAGTTCCAAAACCCGATCGCCTACATCTCCAAAATCGAGAAAGAAGCCTCTCAATACGGAATCTGTAAGATCATTCCACCGCTTCCCCCTTCTCCCAAGAAAACCGCAACTGCCAACCTCACGCGCTCCCGGCCCACCTTTACCACGCGCCAACAGCAGATCGGCTTCTGCCCCCGCCGCGCGCAGCCGGTGCGCCGCCGCGTCTGGCACAGCGGCCATCACTACTCCCTTCGGGAATTCGAAGCCAAGGCTAAGGCCTTCCACAAAACCTACTTAAACAAAAACAAACCCAAACCTCTCGAACTCGAGACGCTCTACTGGAAAGCCACCTTAGACAAACCCTTCTCCGTCGAATATGCGAACGACATGCCTGGCTCCGCGTTTAGCCCCCTCCGTGCTTCGCGCGATGCCGATTACGTTGGCGACACCGCGTGGAACATGAGGGCGGTTTCGCGGGGGAGCGACTCGCTTCTTAGGTTCATGAAAGAGGAAATTCCCGGCGTGACGTCACCCATGGTCTATGTGGCAATGTTGTTCAGCTGGTTCGCGTGGCACGTGGAGGATCACGACTTGCATAGCTTGAACTACCTCCATTTCGGCGCTCCCAAGACTTGGTACGGCGTGCCTAGGGACGCTGCGGTCGCGTTCGAGGACGTTGTCAGAGTTCATGGCTACGGCGGAGAGATTAATCCTCTCGTTACTTTTGCTATTCTTGGCGAGAAAACCACGGTGATGTCTCCGGAGGTTTTTGTTGGCGCCGGTATTCCCTGCTGCAGGCTAGTTCAAAATGCTGGGGAATTTGTTGTGACGTTTCCAAGAGCGTATCACACAGGATTTAGTCATGGGTTTAACTGTGGAGAGGCAGCTAACATTGCGACGCCTGAATGGTTAAGGTTTGCTAAGGATGCTGCTATTCGCAGGGCTTCCATTAACTATCCTCCCATGGTGTCACATTTCCAGTTGCTTTATGACCTTGGCCTTGCCTTTTGTTCTAGAATCCCTGGAGGCATTAGAGCTGAACCACGAAGTTCTCGGCTTAAATATAAGAGAAACGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTACAGGACGTGGTAGAGAACAATGATCTGCTTCACACACTCAGCAAAGGGTCTGCTATAGTACTTCTTCCTCGTAGCTCTTCTGACTTTTCTGTTTGCTCAAAGTTACGCGTTGGATCACAACAACTAAAAGTGAACCCTGAATTTTCTCTCAGTGTATACGATTATGAGAGAATGGATTCCCCAGATTTTATTTCTGATGACCTTATGTTCAACAGGAATCATGGAATCAAACAAGTAAAGAGTTTTTATTCCGTAAAAGAGAAGTTTGTTACGTTGTGTGAAAGGAACAGGGTTTTGCCATTCAGTTCGGATGGGAACATATACCCTTCAAGTTCAAAAACACTGCAAGGAGACAGTGAAAAGGAAAAAGATCAAGGAGATGGGTTGTCAGATCAGAGACTATTTTCTTGTGTCACGTGTGGAATATTAAGCTTTTCCTGTGTTGCCATTGTACAACCTAGAGAACCAGCAGCTAAGTACCTTATGTCAGCTGATTGTAGTTTCTTTAATGATTGGATTGTTGGTTCTGGAGTAACTAGCAATAAATTTGCAAATGCCCATGAAGATGCAAGTATTCCCAAGCCAAGAACATATACAGGCAGGTTCTATTTATTAATGAATACACATCCTTCTGTAGGATGGACTAAGCAAAATGCCCAACATGATTCAAATGGTGTTCCCGTTCAATCTGTTGAGCTCCATGCACAGATTTCTGATCAAAATTACAAGGAGGCTTTAAATTCTGGAAGAGAAAAAGGCAATACAGCTCTTGCATTATTGGCATCAGCGTATGGGAATTCTTCTGACACTGAGGAAGACCAGGGGCGATTAGATATTGCACTTGATGGTGATGAATTAAATGTAATAAACCATCCATCCACTAATGGATCTCAGGAGATGTCAAGTATGCCTTCTCATTTCAAAGATCCCCATGCTAGTCCCATGGTTAGAGTCATTGGACTTGATAAAGGAGATGATATTCATTCAAGACGAATGGACAATTATGAGTATTATATGCATAAAAGAGTTGAGCACATTATGACTCCTTTTGACTACTCTGTTAAGTCAGAAGATCAGGACAACACTTCAGGGGTGGCATTTAGAAATACTAGGGCTGTGCCCCATCTCTCCTTGAATCGTTCCCAAGATACTCACACTGATGAAGACTCGTCTAGAATGCATATCTTCTGTTTAGAGCATGCTGTAGAAGCAGAGCAGCAACTTCGCCCAATAGGAGGAGCACACATATTTCTCCTATGTCATCCAGATTATCCAAAGATAGAGGCTGAAGCAAAGATTGTTGCAGAGGAACTGAGGATTGGTTATACATGGAAGAATACTATATACAGGCAAGCCAACAGGGAAGATGAGGTGAGGATCCAATCAGCTCTGGATAGTGAGGAAGCTATTCCTGGAAATGGGGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTACAGTGCCAATCTTAGCCGATCAGCACTTTACATTAAGCAGATTCCTTACAATTCTGTTATATATAAAGCATTTGGTCAAAGCTCTCCAGCAAGCTCGCCTACAGAGCCCAAGGTCTATCAGAGAAGGACCAACAAGCACAAAAAGGTAGTTGCTGGGAAATGGTGTGGCAAAGTTTGGATGTCCAATCAAGTCCATCCCCTTTTAGCAAAAAGAGATTTCGAAGATGTTGAGAATGAAACAAGCTTACATGGGTGGCCATTGCCTGATGAGAAAATTGAGAGATCAGTAAGTAACCACAAAAGCAATACTTCAACTCGAAAATCTGGTAAGAAATGGAAAAAATCTGTTCAGAAAGGAGGATCCTGGGAAAAAAGTTTTGCTGAGAGAGATTGGCTTTCAGATAATTCCATTGAAGATAAATCCAATAAATATCGAAGGAGGATTCTTGGGAGTAAGCAAACCAGGCATGTTGAGAGAGATGATACTACTTCACAAGGGGATTATTCTCCTCTGCCACATCATAAAAAGCCTATAAGCAAGCATTCAGAATCTAGTGGAAATGATGCAGTTTCTGATGATTTGCTGGATGATGATTCTTGTATACAGCATCGAAGGAGGGCTAACACCAGTGAAGCTAAATTTGTTGGCGGTGATGTGTTTTCAGATGATACAATGGACTACGGGTCTGATTGGTTGCATAGGGGGGAGCTTAGCACTGGGCAGGATGCTATTTCAGACGATTCATTGGGTACCTGTTCTCTTCAGCTGCGCAGAAAGACTCCTAAAGGCAAGTATGTTAAATACATTATAGAAGAAGACATGATTTCTGATGACCAAAGCGAGGTTTGTTTTTGGAAGCAGAGAGGGAATATATCTAAAGGCAGACAAAGATCCCTTTCTGCTAAAAATAAAGATAATCGGGAGCACCATAGGCAGAAACAGCAACAAAAGAATCTGAGAAGCAAGCAAGACAAGCACCTTGCAGTAGAGAATACTATTTCTGATGACCAAATGGAGGGTCGTTTTTTCAAGTATCAAAGAAGGATTCCTAAAAGCAGGCAAGCCAAGTTCATCGGTGAGGAAGATGTAATGTCTGATGACCAGTTGAAGGATCACTTTCAGAAGCCCCAAAGAAGTACTCGAAGGATCAGGCAAAATAAATACAATGATAAAGATCTTATGGATGACTTGCCAAAAAATAATTTTTATATGCTATATAGAACTCGTAAAAGGAAGCAAGCTAAAGATATGGATGAGGACAGTATAGATTCAGATGATCAAATAGAGGATATTTTTCATCTGCAGCACAAAAGAACTCTTCAAAGTAAGCAATCTAAATCTCAGATTCTTCAACCAAAGAAACAAACTAATCCACTCCATTTGAGAAACAAGACATCCCGTCCTGTGAAACAAGGTGCTCCTACGCTAATGAAATCAAAGGCTGCTCGGCAGGCAAAGAATCAATCTGGATACTCAAAAGACTTAACATTACATGTGGAAGAGGAGGAAGATGGTGGACCTCGCACACGACTTAGGAAGAGAGTCCGAGAAAAAGAGTCTGAAGGAAACTTGAAAGAAAAGAGAATCAAAAGGGAAAAGGTGAAGAATACAACAGCTGCGAAGGTTTCAGTTGGCCATGCCAAAACAAAGGATGAGGAATCAGAATATCAGTGTGACATTGAGGGTTGTACCATGAGTTTTGGGTCTAAACAGGAGCTGTTGCAACATAAGAGAAACATTTGTCCTGTGAAAGGATGCGGAAAGAGTTTTTTTTCACACAAATATCTAGTGCAGCATCGTCGAGTTCATGAGGATGACCGCCCATTGAAGTGCCCTTGGAAAGGGTGTAAGATGAGTTTCAAGTGGGCATGGGCACGCACTGAGCACATTCGAGTCCACACTGGTGCTCGTCCTTATGTGTGCGCTGAGCCAGGGTGTGGGCAAACATTTAGATTTGTTTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATGCAACCAAGAAAAATTGTTGA 4638 0.4403 MAGSEEVLPWLKSLPVAPEYRPTTAEFQNPIAYISKIEKEASQYGICKIIPPLPPSPKKTATANLTRSRPTFTTRQQQIGFCPRRAQPVRRRVWHSGHHYSLREFEAKAKAFHKTYLNKNKPKPLELETLYWKATLDKPFSVEYANDMPGSAFSPLRASRDADYVGDTAWNMRAVSRGSDSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHFGAPKTWYGVPRDAAVAFEDVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFVGAGIPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRFAKDAAIRRASINYPPMVSHFQLLYDLGLAFCSRIPGGIRAEPRSSRLKYKRNGEGETVIKELFVQDVVENNDLLHTLSKGSAIVLLPRSSSDFSVCSKLRVGSQQLKVNPEFSLSVYDYERMDSPDFISDDLMFNRNHGIKQVKSFYSVKEKFVTLCERNRVLPFSSDGNIYPSSSKTLQGDSEKEKDQGDGLSDQRLFSCVTCGILSFSCVAIVQPREPAAKYLMSADCSFFNDWIVGSGVTSNKFANAHEDASIPKPRTYTGRFYLLMNTHPSVGWTKQNAQHDSNGVPVQSVELHAQISDQNYKEALNSGREKGNTALALLASAYGNSSDTEEDQGRLDIALDGDELNVINHPSTNGSQEMSSMPSHFKDPHASPMVRVIGLDKGDDIHSRRMDNYEYYMHKRVEHIMTPFDYSVKSEDQDNTSGVAFRNTRAVPHLSLNRSQDTHTDEDSSRMHIFCLEHAVEAEQQLRPIGGAHIFLLCHPDYPKIEAEAKIVAEELRIGYTWKNTIYRQANREDEVRIQSALDSEEAIPGNGDWAVKLGINLFYSANLSRSALYIKQIPYNSVIYKAFGQSSPASSPTEPKVYQRRTNKHKKVVAGKWCGKVWMSNQVHPLLAKRDFEDVENETSLHGWPLPDEKIERSVSNHKSNTSTRKSGKKWKKSVQKGGSWEKSFAERDWLSDNSIEDKSNKYRRRILGSKQTRHVERDDTTSQGDYSPLPHHKKPISKHSESSGNDAVSDDLLDDDSCIQHRRRANTSEAKFVGGDVFSDDTMDYGSDWLHRGELSTGQDAISDDSLGTCSLQLRRKTPKGKYVKYIIEEDMISDDQSEVCFWKQRGNISKGRQRSLSAKNKDNREHHRQKQQQKNLRSKQDKHLAVENTISDDQMEGRFFKYQRRIPKSRQAKFIGEEDVMSDDQLKDHFQKPQRSTRRIRQNKYNDKDLMDDLPKNNFYMLYRTRKRKQAKDMDEDSIDSDDQIEDIFHLQHKRTLQSKQSKSQILQPKKQTNPLHLRNKTSRPVKQGAPTLMKSKAARQAKNQSGYSKDLTLHVEEEEDGGPRTRLRKRVREKESEGNLKEKRIKREKVKNTTAAKVSVGHAKTKDEESEYQCDIEGCTMSFGSKQELLQHKRNICPVKGCGKSFFSHKYLVQHRRVHEDDRPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHATKKNC* 1546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03202 1545 SMART JmjN_1 16 57 IPR003349 -
Phac3g03202 1545 MobiDBLite consensus disorder prediction 1310 1384 - -
Phac3g03202 1545 FunFam Probable lysine-specific demethylase ELF6 1480 1509 - -
Phac3g03202 1545 SMART c2h2final6 1430 1452 IPR013087 -
Phac3g03202 1545 SMART c2h2final6 1453 1477 IPR013087 -
Phac3g03202 1545 SMART c2h2final6 1483 1507 IPR013087 -
Phac3g03202 1545 SMART c2h2final6 1513 1539 IPR013087 -
Phac3g03202 1545 SMART cupin_9 164 333 IPR003347 -
Phac3g03202 1545 MobiDBLite consensus disorder prediction 1315 1346 - -
Phac3g03202 1545 MobiDBLite consensus disorder prediction 1369 1384 - -
Phac3g03202 1545 ProSitePatterns Zinc finger C2H2 type domain signature. 1455 1477 IPR013087 -
Phac3g03202 1545 Gene3D Classic Zinc Finger 1453 1537 - -
Phac3g03202 1545 ProSiteProfiles JmjC domain profile. 164 333 IPR003347 -
Phac3g03202 1545 FunFam Probable lysine-specific demethylase ELF6 10 337 - -
Phac3g03202 1545 MobiDBLite consensus disorder prediction 1167 1200 - -
Phac3g03202 1545 SUPERFAMILY beta-beta-alpha zinc fingers 1453 1489 IPR036236 -
Phac3g03202 1545 Gene3D Classic Zinc Finger 1402 1452 - -
Phac3g03202 1545 ProSitePatterns Zinc finger C2H2 type domain signature. 1515 1539 IPR013087 -
Phac3g03202 1545 ProSiteProfiles JmjN domain profile. 17 58 IPR003349 -
Phac3g03202 1545 PANTHER LYSINE-SPECIFIC DEMETHYLASE 9 1479 - -
Phac3g03202 1545 SUPERFAMILY beta-beta-alpha zinc fingers 1493 1537 IPR036236 -
Phac3g03202 1545 SUPERFAMILY Clavaminate synthase-like 96 338 - -
Phac3g03202 1545 Gene3D Cupin 10 337 - -
Phac3g03202 1545 MobiDBLite consensus disorder prediction 1019 1068 - -
Phac3g03202 1545 ProSiteProfiles Zinc finger C2H2 type domain profile. 1513 1544 IPR013087 -
Phac3g03202 1545 Pfam JmjC domain, hydroxylase 197 315 IPR003347 -
Phac3g03202 1545 MobiDBLite consensus disorder prediction 1019 1037 - -
Phac3g03202 1545 MobiDBLite consensus disorder prediction 1172 1200 - -
Phac3g03202 1545 MobiDBLite consensus disorder prediction 967 993 - -
Phac3g03202 1545 ProSitePatterns Zinc finger C2H2 type domain signature. 1485 1507 IPR013087 -
Phac3g03202 1545 ProSiteProfiles Zinc finger C2H2 type domain profile. 1453 1482 IPR013087 -
Phac3g03202 1545 ProSiteProfiles Zinc finger C2H2 type domain profile. 1483 1512 IPR013087 -
Phac3g03202 1545 FunFam Probable lysine-specific demethylase ELF6 1510 1539 - -
Phac3g03202 1545 Pfam jmjN domain 18 51 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03202 Phac-Chr3 33032553 33042331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03202 1179 1543 C2H2 Transcription Factor Family AT3G48430 37.531 1.03e-67 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac3g03202 JmjC 9.8e-37 CL0029