Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03187 ATGTCTATGCCTTTCTCTCTCACAACCACGCCTTCCTTCAACACTCTAACAATGGCGGAATCCTGCATTCTCTCTCTCCCTTCTCTCTTCCGCGCCAATAACAAAACCCTTTCTCTCTCAATTCCCTCTAAGCGCCTCAACCTCCAGCTTCCATCTTCCAATTCTTCCCTCTTTCCCCTCACCACCAACACCACCCGCTTCCCCTCTCTCCTCACATTCGTCGCCCAGACATCGGATTGGGCCAAAGAAGAGGGAGAAAACGCCGTATGGGAGAACGAAGACGACAACGCGTGGGGAACTGAAGAAGGAGGCGATGACGGCGTGGAAGAAATTACGGGAGGGGGTTTCGCTCAACCACCTGAGGAAGTTAAGATCTTTGTTGGAAACTTGCCTTATGATGTTGATAGCGAGCAATTGGCTTCGCTTTTTAAGCCGGCTGGCACCGTTGAGGTTGCTGAGGTCATTTATAATAGGGTTACTGACCGGAGTCGTGGCTTTGGATTTGTCACCATGAGTACGCTTGAAGAGGTTGAGAAGGCTGTCGAGAAGTTCAGTGGTTATGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCCGCTCCAAAAGGGGCACAGCCTGACCGTTCATCCCGCCCACCACCACGATCCTTTAATTCTACTTCAATCTACGTTGGGAACTTGCCATGGGATGTTGACAAAGCTCGGCTGGAGCAAATTTTTAGTGAACATGGTAAGGTTGAGGAGGCTCGGGTGGTCTATGACAGAGACAGTGGTCGATCACGTGGTTTTGGCTTTGTCACAATGTCCAGTGAGGCTGATGTGAATGATGCAATTGCTGCTCTTGATGGTCAGGAGTTGGATGGGAGAACAATCAGAGTGAATATTGCAGAGGAAAAGCCTAGACGCAGCTCCTTTTGA 918 0.4946 MSMPFSLTTTPSFNTLTMAESCILSLPSLFRANNKTLSLSIPSKRLNLQLPSSNSSLFPLTTNTTRFPSLLTFVAQTSDWAKEEGENAVWENEDDNAWGTEEGGDDGVEEITGGGFAQPPEEVKIFVGNLPYDVDSEQLASLFKPAGTVEVAEVIYNRVTDRSRGFGFVTMSTLEEVEKAVEKFSGYELNGRVLTVNKAAPKGAQPDRSSRPPPRSFNSTSIYVGNLPWDVDKARLEQIFSEHGKVEEARVVYDRDSGRSRGFGFVTMSSEADVNDAIAALDGQELDGRTIRVNIAEEKPRRSSF* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03187 305 FunFam 31 kDa ribonucleoprotein, chloroplastic 210 304 - -
Phac3g03187 305 PANTHER OS02G0815200 PROTEIN 32 301 - -
Phac3g03187 305 SMART rrm1_1 221 294 IPR000504 GO:0003723
Phac3g03187 305 SMART rrm1_1 124 197 IPR000504 GO:0003723
Phac3g03187 305 SUPERFAMILY RNA-binding domain, RBD 212 303 IPR035979 GO:0003676
Phac3g03187 305 MobiDBLite consensus disorder prediction 198 219 - -
Phac3g03187 305 SUPERFAMILY RNA-binding domain, RBD 119 213 IPR035979 GO:0003676
Phac3g03187 305 Gene3D - 75 206 IPR012677 -
Phac3g03187 305 Gene3D - 207 304 IPR012677 -
Phac3g03187 305 PRINTS Paraneoplastic encephalomyelitis antigen family signature 207 224 IPR002343 GO:0003723|GO:1990904
Phac3g03187 305 PRINTS Paraneoplastic encephalomyelitis antigen family signature 225 240 IPR002343 GO:0003723|GO:1990904
Phac3g03187 305 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 138 IPR002343 GO:0003723|GO:1990904
Phac3g03187 305 PRINTS Paraneoplastic encephalomyelitis antigen family signature 240 252 IPR002343 GO:0003723|GO:1990904
Phac3g03187 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 298 IPR000504 GO:0003723
Phac3g03187 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 201 IPR000504 GO:0003723
Phac3g03187 305 CDD RRM2_NsCP33_like 222 296 - -
Phac3g03187 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 194 IPR000504 GO:0003723
Phac3g03187 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 292 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03187 Phac-Chr3 32676751 32679716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03187 125 302 Eukaryotic Initiation Factors Gene Family AT3G16380 33.696 4.15e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03187 - - gmx:100804984 420.624