Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03156 ATGAACCCTTACGACAATAGATACTCTGATTCCGCTTCTTTTCATGCTCGTCGCAGTGATTTCGTTAGATCTATTCCTCCGCCGTCTTTTGGCGGTCGCGGCGATGCGGTTCCCTACGGCGCCTTTAGACCCAACGGGTTCGGATCCGCACCCCTTGCTCCGATTCCAGCATTTGTGCCCCCTCCTGGGGGGTTTAGCGTAGGACGAGGTAGTGCTAGAGTGGGCAATGGTCACATGAGTGATAGAAAATACGACATAGGTCGTAGCGGCGGTGGAAGAGGTCGTGGTGGTGGTAGAGGCGGGGCTCACGGTTTTAGGGGCTCCAGGAGAGGAGGTAGACACGATGGTGGTTCTTCTAGGGACGATTTGAACAACATTACACTTCCGAAGCAGAGTTTTAGGAATTTGGTCCCTTTTGAGAAGAATTTTTACGTTGAGTGCCCTGCGGTGAGAGCCATGACTGAGCAAGAAGTTACGCATTACCGTGCTTGTAGAGAGATCACCGTGCAAGGGCATGATGTGCCGAAACCTGTACGGATGTTTCACGAGGCGAATTTTCCTGATTATTGCCTTGAGGTCATTGCCAATCTGGGTTTTGCTGAGCCCACTCCAATTCAGGCTCAGGGTTGGCCTATGGCAATGAAGGGTAGAGATTTAATTGGCATTGCTGAGACTGGCTCGGGTAAAACTTTGGCGTATTTGCTTCCTGCTTTAGTGCACGTCAATGCTCAACCTCGATTGTCACATGGTGATGGTCCCATTGTCTTAGTATTAGCACCGACAAGAGAGCTAGCTATTCAAATTCAAGAAGAGGCTCTGAAATTTGGGTCACGAACAAATTGTAGAAGTACGTGCATCTATGGTGGTGCACCAAAGGGCCCCCAAATTCGTGAGCTAAGAAGAGGCGTTGAGATTGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACAAACCTTCAAAGAGTGACTTACCTTGTCTTGGATGAAGCTGATCGAATGCTGGACATGGGCTTTGAACCTCAGATACGGAAAATTGTAGGCCAGATTCGACCAGATAGACAAACATTATTATGGAGTGCTACATGGCCAAGGGAGGTTGAGACTCTGTCAAGGCAGTTTCTCCGCAATCCATACAAGGTAATTGTTGGGTCACCAAACCTGAAGGCAAATCAATCTATAAATCAAGTTGTTGAAGTTGTAACAGACATGGAGAAATATAATAGATTAATCAGACTGCTGAAAGAAGTGATGGACGGGAGCCGAGTTCTAATATTTATGGAGACTAAAAAGGGATGTGATCAAGTTACGAGACAAATGAGAATGGATGGGTGGCCAGCACTATCCATCCATGGTGATAAAAACCAGGCTGAGAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGGTAGGATCATTGTGTTTAGAAGCTTAGGATTTTTTATCTAG 1506 0.4701 MNPYDNRYSDSASFHARRSDFVRSIPPPSFGGRGDAVPYGAFRPNGFGSAPLAPIPAFVPPPGGFSVGRGSARVGNGHMSDRKYDIGRSGGGRGRGGGRGGAHGFRGSRRGGRHDGGSSRDDLNNITLPKQSFRNLVPFEKNFYVECPAVRAMTEQEVTHYRACREITVQGHDVPKPVRMFHEANFPDYCLEVIANLGFAEPTPIQAQGWPMAMKGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLSHGDGPIVLVLAPTRELAIQIQEEALKFGSRTNCRSTCIYGGAPKGPQIRELRRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLLWSATWPREVETLSRQFLRNPYKVIVGSPNLKANQSINQVVEVVTDMEKYNRLIRLLKEVMDGSRVLIFMETKKGCDQVTRQMRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLGRIIVFRSLGFFI* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03156 501 Pfam DEAD/DEAH box helicase 203 374 IPR011545 GO:0003676|GO:0005524
Phac3g03156 501 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 331 339 IPR000629 -
Phac3g03156 501 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 385 IPR014001 -
Phac3g03156 501 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 413 501 IPR001650 -
Phac3g03156 501 CDD DEADc_DDX5_DDX17 191 385 - -
Phac3g03156 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 387 IPR027417 -
Phac3g03156 501 FunFam probable ATP-dependent RNA helicase DDX17 141 388 - -
Phac3g03156 501 CDD SF2_C_DEAD 398 488 - -
Phac3g03156 501 MobiDBLite consensus disorder prediction 69 126 - -
Phac3g03156 501 Gene3D - 152 387 IPR027417 -
Phac3g03156 501 Gene3D - 388 489 IPR027417 -
Phac3g03156 501 Pfam Helicase conserved C-terminal domain 409 488 IPR001650 -
Phac3g03156 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 488 IPR027417 -
Phac3g03156 501 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 179 207 IPR014014 GO:0003724
Phac3g03156 501 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 154 488 - -
Phac3g03156 501 SMART ultradead3 198 401 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03156 Phac-Chr3 32456069 32464328 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03156 166 488 Eukaryotic Initiation Factors Gene Family AT3G19760 32.407 1.89e-50 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03156 K12823 - gmx:100817092 823.928