Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03139 ATGGCATCATCCAGCTCTTACAATTCTCCATGTGCTGCCTGCAAATTCTTGAGGAGGAAATGCATGCCAGGATGCATCTTTGCGCCTTACTTCCCACCCGAAGAGCCTCAAAAATTCGCAAACGTCCACAAAATATTTGGTGCAAGCAATGTGACCAAACTCCTCAACGAACTCCTCCCTCAGCAGAGGGAGGATGCAGTGAACTCACTCGCATATGAAGCAGAGGCACGCGTGAGGGACCCAGTTTATGGCTGCGTAGGAGCCATCTCTTTCCTGCAAAGACAAGTTCAAAGGCTCCAAAAGGAGCTTGATGCTGCAAACGCTGATCTGCTACGCTACTCTTACACTGACATCCCTCCAGCATCTCTTTCTGTGCCACCAGGACTTGCTTCATTTCAACACATACCCCAAAGGCAGTTTACTGCAAGATTTGGTAACGAAACTGGGTTTTATCGGCAATCTGCTGCTGCTGCTTATTCCTTCCCTTATGCAGTTCCTTGGACTGATACCTCTTCGGAGGACATCAGTGAGGGAGGAGGGGGAGGAGGTAATTTGTGA 558 0.491 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPQQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYSYTDIPPASLSVPPGLASFQHIPQRQFTARFGNETGFYRQSAAAAYSFPYAVPWTDTSSEDISEGGGGGGNL* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03139 185 Coils Coil 89 109 - -
Phac3g03139 185 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Phac3g03139 185 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 134 - -
Phac3g03139 185 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03139 Phac-Chr3 32356430 32358737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03139 2 116 AS2 family AT5G63090 90.435 1.30e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phac3g03139 LOB 3.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03139 - - gmx:100775922 335.495