Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03067 ATGGCTATCAGAGGCGTGGATTTCAAGTGGTACGATGGCTTTTTTTTGGCCATGCTCGCCACCAGTGTAGTTATTGTCGCAATTAATTGGAAGCGGTATCATTCTTGTACCTATCCGTTGCACATATGGATTGTGGTCGACTACACTACTGTGTTTGTTTTCCGGCTCTTGATGTTTGTTGATAACGGGCTTGCTGCGGGAATGGGTTTAGATTTTGGGCGGCAGCAGAGGTATGCTCGTTTCTGTGGAAGAGTAGTTGTCCTTTCAATCCTTGTGTTGCTTCTCTATCCATTTCTGTGGGCTTGGACTGTAATTGGTACCCTGTGGTTCAGCAGTGCAAAGAACTGTTTGCCTGAAGATGGTCAAAAATGGGGATTTCTCATCTGGCTACTTTTTAGTTACTGTGGACTCCTTTGCATTGCTTGCATGTCTCTGGGAAAGTGGTTGACACGAAGACAAGCACATCTGCTGCGTGCTCAACAGGGTATCCCTGTATCTGAATATGGGGTTCTGGTTGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCTGGTCAGGAAACAAGGGGCATGGTACAAGATGCTGCGGCATATCATCCAGGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTAAAGGCTGTTCCTACTGATTGCAGTGAATGTCCCATCTGCTTAGAAGAGTTCTATGTAGGGAATGAGGTTCGAGGCTTGCCTTGTGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTAGGCTGAATGTGAAATGTCCTCGGTGCCGTTGCTCAGTATTCCCAAACCTTGATCTTAGTGCACTGTCCAATCTCCCTGCTGAGCCTGAGCGATCTTCTGCAAGTGTAGTGACAACAACCAGTTATGTGAGAGGCCAACCGTCTAGTCAAAGTTACCGGTTAAGATTGCAGGGCCTTCTGCGTCCAGTCCGTGCTGAAATTGCTGGCCCTGTTGGTGACATAGATAATGCGTTGGAAAATGCTGAGAACGGTTTTGTATCAATCGTGACTCACAATGCATCATCTGGAGACCACGTCTCTTCTGTCGAATGCGTGCCTGTCACCGTGAGACTTTCCTCTGCACAAAGTTAG 1149 0.4691 MAIRGVDFKWYDGFFLAMLATSVVIVAINWKRYHSCTYPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGRQQRYARFCGRVVVLSILVLLLYPFLWAWTVIGTLWFSSAKNCLPEDGQKWGFLIWLLFSYCGLLCIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMVQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLPAEPERSSASVVTTTSYVRGQPSSQSYRLRLQGLLRPVRAEIAGPVGDIDNALENAENGFVSIVTHNASSGDHVSSVECVPVTVRLSSAQS* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03067 382 SMART ring_2 235 275 IPR001841 -
Phac3g03067 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 359 IPR044793 GO:0004842|GO:0010182
Phac3g03067 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Phac3g03067 382 SUPERFAMILY RING/U-box 217 284 - -
Phac3g03067 382 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Phac3g03067 382 Pfam Ring finger domain 234 276 IPR001841 -
Phac3g03067 382 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03067 Phac-Chr3 31909210 31916266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03067 58 360 C3H Transcription Factor Family AT3G47990 74.183 9.17e-161 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03067 K16284 - gmx:100812016 740.339