Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03053 ATGCGCAACATTCAGATTGAAACGAAGCAAAATGGTGGTGTGAAGTACTCAGACGAGTCATATCCTCAATCTCCTTTCTCAGCATACCAAGCTCCTAATGACGGCAACACTACCAACGAGAAAGAAACAACAACGCCATCATCTCTCAGCAGAATCAGTCCACTCATTTTGCTGGTCATAATTGTTCTAGCAGTTATCTTCTTCGTGTATGGACTTGTCCATTTGGTTCTATGGTTTTTCATGAAAACACCAACCTCTTCATCAGTCTACAACTCCAACAGGTTCCACGAATCCACGCGCTCACGTGTTCTTCAGAGGCAGCTTCAACAACTCTTCCGCTTGCACGACTCAGGTCTAGACCAAGCCCTCATAGACGCTCTACCCGTTTTCCGTTACCAAGACTTATTGGGTTCAAAGGAACCGTTTGATTGTGCCGTGTGTTTATGCGAGTTCTCCGAGGACGACAAGCTGAGGTTGCTTCCTATGTGCACACACGCGTTTCACATGAACTGTCTTGACACGTGGCTTCTCTCGAATTCCACGTGTCCTCTTTGCAGGGCGTCTCTCTCCAACTACGTGGAGAATCAGAATCAGAATCCAATGCTGTTTAATGTCGGCATTGGCAATTCAAATTGTTTGGTTCTGCCAAGTGGGTTCAGTGGTGAGGAAGAGAAGGGGTTTTCAGAGAGTGAAAGATCAGTTGGGAAAAGGGTGTTTTCTGTGAGGCTTGGAAAATTCAGAAAGAATGGGTTGGAGTTAGAGAGTGGAGATAGTTGTAGTTTGAATGAGAGGAGATGCTACTCCATGGGTTCATATCGGTATGTGGTTCGTGATTCGAATCTGCAAGTGGTGTTGTCTGAATCTGGTGATGTTTCAGAAAATGAGAATGTGAAGGGAAAGAGGATAAGCGACTCAACCAAAGGTGAGAGCTTCTCTGTTTCCAAGATATGGCTTTGGTCCAAGAACCCCACGTTTCATGCTTCTAATGCAGCTTTCCCCTAA 1002 0.4541 MRNIQIETKQNGGVKYSDESYPQSPFSAYQAPNDGNTTNEKETTTPSSLSRISPLILLVIIVLAVIFFVYGLVHLVLWFFMKTPTSSSVYNSNRFHESTRSRVLQRQLQQLFRLHDSGLDQALIDALPVFRYQDLLGSKEPFDCAVCLCEFSEDDKLRLLPMCTHAFHMNCLDTWLLSNSTCPLCRASLSNYVENQNQNPMLFNVGIGNSNCLVLPSGFSGEEEKGFSESERSVGKRVFSVRLGKFRKNGLELESGDSCSLNERRCYSMGSYRYVVRDSNLQVVLSESGDVSENENVKGKRISDSTKGESFSVSKIWLWSKNPTFHASNAAFP* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03053 333 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Phac3g03053 333 Pfam Ring finger domain 143 186 IPR001841 -
Phac3g03053 333 SMART ring_2 144 185 IPR001841 -
Phac3g03053 333 CDD RING-H2_EL5-like 143 186 - -
Phac3g03053 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 47 317 - -
Phac3g03053 333 MobiDBLite consensus disorder prediction 1 46 - -
Phac3g03053 333 FunFam RING-H2 finger protein ATL46 106 191 - -
Phac3g03053 333 SUPERFAMILY RING/U-box 123 202 - -
Phac3g03053 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 196 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03053 Phac-Chr3 31780369 31782153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03053 41 330 C3H Transcription Factor Family AT2G18650 39.205 3.24e-50 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03053 - - vum:124828898 578.556