Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03036 ATGGCATCATTTGCAGGCACTACACAGAAGTGCACAGCTTGTGAAAAGAAAGTGTATTGGGTGGAACAGCTAACTGCTGACAACAAGTTGTACCACAAATCTTGCTTTAGATGTCACCACTGCAAGGGCACCCTCAAGCTAGGTAACTATTGTTCCTTTGAGGGTGTCCTATACTGTAAGCCCCATTTTGATCAGCTGTTTAAGATGACTGGCAGCTTGGAAAAAAGTTTTGAAGGTATTCCAAGAATTGCTAGAGTTGAAAGATCTGCTGATCAGGTCCAAACCAACAACAAGGTTTCAAGGTTGTTTTCTGGAACTCAGGAAAAGTGTGTTGTTTGCAAGAAAACAGTGTACCCTATTGAAAAGGTGGCTGTTGATGGGAAATCTTACCACAAGTCTTGTTTCAGATGCACCCATGGAGGTTGTGTGATCAGTCCATCAAATTATGTTGCCCATGAACATCGTCTTTATTGCAGACACCACCATACTCAGCTGTTTAAGCAAAAGGGCAACTTCAGTCAATTAGTCAAGCATGAAAATCTCCAACTCACCACTCAAAACACTACACAATTACATCCAAGTAATGGCAGTGCAAGTCCAGTACATGACTCTTCTTAG 618 0.4191 MASFAGTTQKCTACEKKVYWVEQLTADNKLYHKSCFRCHHCKGTLKLGNYCSFEGVLYCKPHFDQLFKMTGSLEKSFEGIPRIARVERSADQVQTNNKVSRLFSGTQEKCVVCKKTVYPIEKVAVDGKSYHKSCFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLVKHENLQLTTQNTTQLHPSNGSASPVHDSS* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03036 205 MobiDBLite consensus disorder prediction 186 205 - -
Phac3g03036 205 PANTHER OS06G0237300 PROTEIN 2 94 - -
Phac3g03036 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Phac3g03036 205 Pfam LIM domain 11 65 IPR001781 -
Phac3g03036 205 Pfam LIM domain 110 165 IPR001781 -
Phac3g03036 205 Gene3D Cysteine Rich Protein 5 75 - -
Phac3g03036 205 Gene3D Cysteine Rich Protein 104 174 - -
Phac3g03036 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Phac3g03036 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Phac3g03036 205 FunFam LIM domain and actin-binding 1 104 174 - -
Phac3g03036 205 CDD LIM2_SF3 110 170 - -
Phac3g03036 205 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Phac3g03036 205 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Phac3g03036 205 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Phac3g03036 205 SMART lim_4 109 161 IPR001781 -
Phac3g03036 205 SMART lim_4 10 62 IPR001781 -
Phac3g03036 205 FunFam LIM domain and actin-binding 1 5 75 - -
Phac3g03036 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03036 Phac-Chr3 31667052 31670291 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Phac3g03036 LIM 1.5e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03036 K09377 - gmx:100792627 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g03036 3 31667052 31670291 Phac3g03036 3 31667052 31670291 ECH