LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac3g03035	ATGGCATCATTTGCAGGCACTACACAGAAGTGCACAGCTTGTGAAAAGAAAGTGTATTGGGTGGAACAGCTAACTGCTGACAACAAGTTGTACCACAAATCTTGCTTTAGATGTCACCACTGCAAGGGCACCCTCAAGCTAGGTAACTATTGTTCCTTTGAGGGTGTCCTATACTGTAAGCCCCATTTTGATCAGCTGTTTAAGATGACTGGCAGCTTGGAAAAAAGTTTTGAAGGTATTCCAAGAATTGCTAGAGTTGAAAGATCTGCTGATCAGGTCCAAACCAACAACAAGGTTTCAAGGTTGTTTTCTGGAACTCAGGAAAAGTGTGTTGTTTGCAAGAAAACAGTGTACCCTATTGAAAAGTTGTTTCTTCAGGTGGCTGTTGATGGGAAATCTTACCACAAGTCTTGTTTCAGATGCACCCATGGAGGTTGTGTGATCAGTCCATCAAATTATGTTGCCCATGAACATCGTCTTTATTGCAGACACCACCATACTCAGCTGTTTAAGCAAAAGGGCAACTTCAGTCAATTAGTCAAGCATGAAAATCTCCAACTCACCACTCAAAACACTACACAATTACATCCAAGTAATGGCAGTGCAAGTCCAGTACATGACTCTTCTTAG	630	0.4175	MASFAGTTQKCTACEKKVYWVEQLTADNKLYHKSCFRCHHCKGTLKLGNYCSFEGVLYCKPHFDQLFKMTGSLEKSFEGIPRIARVERSADQVQTNNKVSRLFSGTQEKCVVCKKTVYPIEKLFLQVAVDGKSYHKSCFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLVKHENLQLTTQNTTQLHPSNGSASPVHDSS*	210

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac3g03035	209	CDD	LIM2_SF3	110	174	-	-
	Phac3g03035	209	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	3	36	-	-
	Phac3g03035	209	MobiDBLite	consensus disorder prediction	190	209	-	-
	Phac3g03035	209	Pfam	LIM domain	110	169	IPR001781	-
	Phac3g03035	209	Pfam	LIM domain	11	65	IPR001781	-
	Phac3g03035	209	SMART	lim_4	109	165	IPR001781	-
	Phac3g03035	209	SMART	lim_4	10	62	IPR001781	-
	Phac3g03035	209	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	140	179	-	-
	Phac3g03035	209	PANTHER	OS06G0237300 PROTEIN	2	94	-	-
	Phac3g03035	209	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	37	77	-	-
	Phac3g03035	209	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	102	139	-	-
	Phac3g03035	209	ProSiteProfiles	LIM domain profile.	108	172	IPR001781	-
	Phac3g03035	209	Gene3D	Cysteine Rich Protein	5	75	-	-
	Phac3g03035	209	Gene3D	Cysteine Rich Protein	104	178	-	-
	Phac3g03035	209	FunFam	LIM domain and actin-binding 1	104	178	-	-
	Phac3g03035	209	ProSitePatterns	LIM zinc-binding domain signature.	11	45	IPR001781	-
	Phac3g03035	209	ProSiteProfiles	LIM domain profile.	9	69	IPR001781	-
	Phac3g03035	209	FunFam	LIM domain and actin-binding 1	5	75	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac3g03035	Phac-Chr3	31667052	31670291	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LIM	Phac3g03035		LIM	4e-09	CL0167

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac3g03035	K09377		-	gmx:100792627	372.859