Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g03017 ATGGCTTCTTCAGATCCCATCTCTTCCAAACACTACACTTACAACAGAAAACAGAAGTCCCTGGGACTTTTGTGCACCAATTTCTTGAGTCTCTATAACCGAGACGCAGTGCACTTAATTGGCCTTGATGACGCTGCCACTCGATTAGGAGTCGAGAGAAGACGGATCTACGACATTGTTAACGTTCTCGAGAGTATTGGGGTTCTCTCCAGGAAAGCGAAAAATCAGTATACCTGGAAAGGTTTTGCTGCAATTCCTCTCACTCTTCGGGAGCTCAAAGAAGATGGTCTGAGGGATAATTCCAATTCCTTGCGCGGGTCCACTAACGACGACATGGATAAAGTGTCCGATGATGAAGATGATGAAGAAACACAGTCCAACGCCGCTACTGGAAGTCAAAATGACAAATTGAACTCTAAATCTACTCAACCCAGATCACTAAAAAATGAAAATCGAAGGGAAAAATCTTTGGCTCTGCTGACCCAGAATTTTGTCAAGCTCTTTGTGTGCTCTAATGTTGAATTGATCTCCCTTGACGAGGCTGCAAAATTGTTGCTTGGAGATGCTCACAATACTTCAATAATGAGAACAAAAGTTAGACGTCTATATGACATCGCAAATGTGCTATCCTCCATGAACCTTATTGAGAAGACCCATACGTCAGATACAAGAAAACCAGCATTCAGGTGGCTGGGTCCTGAAGGGAAGACATGGAATGAGTCACTTCACAAATCAAATCAGAACGACTCTAGGAAAAGGGCGTTTGGAAGTGATATTACAAACATCAGTTTTGAGAGGAGTAAGGTAGAATTATTCACAAATGAAGACTTAAATTCGAATCCTAAGAAGCTAAAAATTGAAAACGATATAGGGCCGAGTCAGGCAGATGAGAACAATTTAAAACAAGACACAAAACAAACTTCGAAGAGCTTTCAGTTTGGTCCTTTCTCTCCAGCGTGCGTGCCCAGAGTTGGAGCATCTGGGAATCATAATACGAAGCAGGTGCATGACTGGGATGGTCTAGTGAATGCACACAGCCCTCAGTATCAAAACGAAGGTAATCAATATTTCACATTTCCCCCAACATAA 1089 0.4233 MASSDPISSKHYTYNRKQKSLGLLCTNFLSLYNRDAVHLIGLDDAATRLGVERRRIYDIVNVLESIGVLSRKAKNQYTWKGFAAIPLTLRELKEDGLRDNSNSLRGSTNDDMDKVSDDEDDEETQSNAATGSQNDKLNSKSTQPRSLKNENRREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLGDAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTSDTRKPAFRWLGPEGKTWNESLHKSNQNDSRKRAFGSDITNISFERSKVELFTNEDLNSNPKKLKIENDIGPSQADENNLKQDTKQTSKSFQFGPFSPACVPRVGASGNHNTKQVHDWDGLVNAHSPQYQNEGNQYFTFPPT* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g03017 362 MobiDBLite consensus disorder prediction 126 145 - -
Phac3g03017 362 SUPERFAMILY "Winged helix" DNA-binding domain 15 79 IPR036390 -
Phac3g03017 362 FunFam E2F transcription factor 8 11 83 - -
Phac3g03017 362 Gene3D - 11 83 IPR036388 -
Phac3g03017 362 Gene3D - 147 233 IPR036388 -
Phac3g03017 362 MobiDBLite consensus disorder prediction 98 152 - -
Phac3g03017 362 MobiDBLite consensus disorder prediction 283 305 - -
Phac3g03017 362 SUPERFAMILY "Winged helix" DNA-binding domain 154 233 IPR036390 -
Phac3g03017 362 SMART E2F_TDP_2 16 81 IPR003316 GO:0005667|GO:0006355
Phac3g03017 362 SMART E2F_TDP_2 152 232 IPR003316 GO:0005667|GO:0006355
Phac3g03017 362 FunFam E2F transcription factor-like E2FE 147 234 - -
Phac3g03017 362 PANTHER TRANSCRIPTION FACTOR E2F 9 349 IPR015633 GO:0000978|GO:0006357
Phac3g03017 362 Pfam E2F/DP family winged-helix DNA-binding domain 17 81 IPR003316 GO:0005667|GO:0006355
Phac3g03017 362 Pfam E2F/DP family winged-helix DNA-binding domain 154 232 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g03017 Phac-Chr3 31569637 31573016 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g03017 11 352 E2F-DP Transcription Factor Family AT3G48160 54.261 3.89e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Phac3g03017 E2F_TDP 1.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g03017 K09391 - gmx:100795252 595.504