LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac3g03017	ATGGCTTCTTCAGATCCCATCTCTTCCAAACACTACACTTACAACAGAAAACAGAAGTCCCTGGGACTTTTGTGCACCAATTTCTTGAGTCTCTATAACCGAGACGCAGTGCACTTAATTGGCCTTGATGACGCTGCCACTCGATTAGGAGTCGAGAGAAGACGGATCTACGACATTGTTAACGTTCTCGAGAGTATTGGGGTTCTCTCCAGGAAAGCGAAAAATCAGTATACCTGGAAAGGTTTTGCTGCAATTCCTCTCACTCTTCGGGAGCTCAAAGAAGATGGTCTGAGGGATAATTCCAATTCCTTGCGCGGGTCCACTAACGACGACATGGATAAAGTGTCCGATGATGAAGATGATGAAGAAACACAGTCCAACGCCGCTACTGGAAGTCAAAATGACAAATTGAACTCTAAATCTACTCAACCCAGATCACTAAAAAATGAAAATCGAAGGGAAAAATCTTTGGCTCTGCTGACCCAGAATTTTGTCAAGCTCTTTGTGTGCTCTAATGTTGAATTGATCTCCCTTGACGAGGCTGCAAAATTGTTGCTTGGAGATGCTCACAATACTTCAATAATGAGAACAAAAGTTAGACGTCTATATGACATCGCAAATGTGCTATCCTCCATGAACCTTATTGAGAAGACCCATACGTCAGATACAAGAAAACCAGCATTCAGGTGGCTGGGTCCTGAAGGGAAGACATGGAATGAGTCACTTCACAAATCAAATCAGAACGACTCTAGGAAAAGGGCGTTTGGAAGTGATATTACAAACATCAGTTTTGAGAGGAGTAAGGTAGAATTATTCACAAATGAAGACTTAAATTCGAATCCTAAGAAGCTAAAAATTGAAAACGATATAGGGCCGAGTCAGGCAGATGAGAACAATTTAAAACAAGACACAAAACAAACTTCGAAGAGCTTTCAGTTTGGTCCTTTCTCTCCAGCGTGCGTGCCCAGAGTTGGAGCATCTGGGAATCATAATACGAAGCAGGTGCATGACTGGGATGGTCTAGTGAATGCACACAGCCCTCAGTATCAAAACGAAGGTAATCAATATTTCACATTTCCCCCAACATAA	1089	0.4233	MASSDPISSKHYTYNRKQKSLGLLCTNFLSLYNRDAVHLIGLDDAATRLGVERRRIYDIVNVLESIGVLSRKAKNQYTWKGFAAIPLTLRELKEDGLRDNSNSLRGSTNDDMDKVSDDEDDEETQSNAATGSQNDKLNSKSTQPRSLKNENRREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLGDAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTSDTRKPAFRWLGPEGKTWNESLHKSNQNDSRKRAFGSDITNISFERSKVELFTNEDLNSNPKKLKIENDIGPSQADENNLKQDTKQTSKSFQFGPFSPACVPRVGASGNHNTKQVHDWDGLVNAHSPQYQNEGNQYFTFPPT*	363

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Phac3g03017	362	MobiDBLite	consensus disorder prediction	126	145	-	-
Phac3g03017	362	SUPERFAMILY	"Winged helix" DNA-binding domain	15	79	IPR036390	-
Phac3g03017	362	FunFam	E2F transcription factor 8	11	83	-	-
Phac3g03017	362	Gene3D	-	11	83	IPR036388	-
Phac3g03017	362	Gene3D	-	147	233	IPR036388	-
Phac3g03017	362	MobiDBLite	consensus disorder prediction	98	152	-	-
Phac3g03017	362	MobiDBLite	consensus disorder prediction	283	305	-	-
Phac3g03017	362	SUPERFAMILY	"Winged helix" DNA-binding domain	154	233	IPR036390	-
Phac3g03017	362	SMART	E2F_TDP_2	16	81	IPR003316	GO:0005667\|GO:0006355
Phac3g03017	362	SMART	E2F_TDP_2	152	232	IPR003316	GO:0005667\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac3g03017	Phac-Chr3	31569637	31573016	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac3g03017	11	352	E2F-DP Transcription Factor Family	AT3G48160	54.261	3.89e-113	333

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	E2F-DP	Phac3g03017		E2F_TDP	1.1e-20	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac3g03017	K09391		-	gmx:100795252	595.504

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