Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02996 ATGGAAGCTCCCCTCATCAACGACGCCACATTCTCTTCTGCCAACCCTTCCTTGTCCGAAATTTTGCCCTCGCAATCCCTCTCCTCCAACAAGAGACCCTCTTCTCTTCTTCTTCGCAATCACTCTCCAAACAATAACAAACATGTTAAGCTATCACCACCCTCAGAGACACACCAAAACGCTGCGTTCCAGCCGCCTCAACCCAACCACGACTACATACACGTGCGAGCAAGAAGAGGCCAAGCCACCGATAGCCACAGTCTCGCCGAAAGAGCTAGAAGGGAAAAGATCAGTGAGAGGATGAGAGTTCTTCAAGATTTAGTCCCCAGTTGTAGCAAGGTAATTGGCAAAGCGCTTGTCCTGGACGAGATTATTAATTACATCCAGTCACTGCAGCGTCAGGTTGAGTTTCTTTCAATGAAGCTTGAGGCGGTTAATTCGAGATTAAGCATGAGCCCCTCTATTGAATGTTTTCCTTCAAAAGAATGA 489 0.4744 MEAPLINDATFSSANPSLSEILPSQSLSSNKRPSSLLLRNHSPNNNKHVKLSPPSETHQNAAFQPPQPNHDYIHVRARRGQATDSHSLAERARREKISERMRVLQDLVPSCSKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLSMSPSIECFPSKE* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02996 162 FunFam Basic helix-loop-helix transcription factor 78 150 - -
Phac3g02996 162 CDD bHLH_AtBPE_like 71 150 - -
Phac3g02996 162 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 39 162 IPR024097 GO:0006355
Phac3g02996 162 Gene3D - 78 155 IPR036638 GO:0046983
Phac3g02996 162 MobiDBLite consensus disorder prediction 1 70 - -
Phac3g02996 162 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 149 IPR036638 GO:0046983
Phac3g02996 162 SMART finulus 87 137 IPR011598 GO:0046983
Phac3g02996 162 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 131 IPR011598 GO:0046983
Phac3g02996 162 Pfam Helix-loop-helix DNA-binding domain 85 132 IPR011598 GO:0046983
Phac3g02996 162 Coils Coil 128 148 - -
Phac3g02996 162 MobiDBLite consensus disorder prediction 8 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02996 Phac-Chr3 31418860 31422127 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02996 52 162 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 79.279 1.05e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac3g02996 HLH 6.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02996 - - vra:106766826 270.781