Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02979 ATGATTCCTAAAGAGAATATTTCGAAGCTGTTCCAAGAACTCGTGTACAGTATTGGTATCTTGCAAACCTACATCTACAAACATATGCTGAAAGAAGAAAAGCAGGTTTTTCCCCTATTGATGCAGAAATTATCTACTGAAGAACAGGCCTCACTTGTGTGGCTATTCATATGTAGTGTTCCTATAATGTTTCTGGAGGAACTTTTTCCATGGATGGTATCCTTCCTTTCTGCAAGTAAGCAGTCAGAAGTTACCCAGTGTATAAATGAAATTGCACCAATGGAAACAGCACTGCAAGAGGTTTTGGTTTCTTGGCTTAGAAGCAACAAACAAACCTTTACTGAGACCTGTTTTCAGAGTGGAGAATTTCAAGGTGTTGATGGTTTCCTGCATATAGAAAGATCATATAGGAAAACCGAAGAAGTTTCAAGTCTAATGGAAGTGAATGGCCAAGAAATAGAAGATGGGGTCAACCAGGTTAATGTCCTTCATCTTTGGCATAATGCCATCAAGAAAGATTTGAAAGAAATTCTGAAAGAACTTTACCTACTAAGAAAATCAGGCTGTTTTCAGAATTTAGACTCAATACTTATCCAAGTGAAATTCTTTGCTGATGTCCTCATCTTCTACAGCAATGCTCTGAAGAAATTCTTTCATCCTGTACTGAGTAAATATGCTAATGGCTGGTTGTCCAAGTCTATTGAAACATTTCTAGGTGAAAGTAACATTGAAGATATACAACAACAGTTGCTATTCTATAACTCAGAAAGTGGAACATCTTTGAGCAAGTTCGTAGAGAAGCTTTGCCAAAAACTGGAATCATTTGTATCAGGAGTTAACAAACAATTTGCTTTTCAAGAAAATGAGGTATTTCCTATCTTTAGAGAGAACTGCAGAAAGGGAATGCAAGAGGGACTTCTAAGCTTGAGCCTACATATGATGCCTCTGGGGTTACTAAAATGTGTTATAACTTGGTTTTCAGTTAGATTGTCTGAAAAAGAGTCCAGGTCCATTCTCTATTGCATAAAGAAAGGAAACAATTCTGTCTGTAAAGCTTTTTCATCATTATTACATGAGTGGTTCCGCATTGGCTATTCAGGTAAAGCCTCTATTGAAAAATTCAGACTAGACTTGCAACATATGTTCAAAAGAAGATGCTTTATTTCACCTGAAGAAATTAAGGAAGCTCATAGATTTTCTTTCATAAATTCTGAGAAGCAGCCTCATAAAGTCTCTGACCAGAATTCTTTGTCCTGTTCTTCCTCATCTGGATCCAGTAATGTAAACAAGTATGAGATACCATACTCTACAGGAATTAATCTGCACATATTTTTTCCTGCTACAGTTGGGAAGTTACATCAGTATCCTGCATTACATGCAGCAGAACGATCTTCTATTTCCTTTCTTGATGATCCGAAACCAATTGACCTAATATTTTTCTTTCACAAAGCTATCAAGAAAGATTTGGAGTTCCTAGTTCTTGGCTCAGCCGAGCTAGAAAAAAATGATAAGTTGCTTACGGATTTCCAGAAACGATTCCATCTCATATATTTTCTTCATCAGATCCACAGTGATGCAGAGGATGAGATAGTTTTTCCAGCCTTGGAGGCAAGAGGAAAACTAAAAAACATTAGCCATGCTTACACTTTTGATCACAACCATGAAGTTGAACACTTCAATGAAATATCTCACATCCTTGATAAGATGTCTAGATTACATCTTTCAATTTCTACAATTGATTCAAATATAAAGGAGATGGGACTGCTAAGGTATCAGCATTTATGCAGGAAGCTGCAAGAAATGTGCAAATCAATGTATACATCGCTTTCCAATCATATAGACCGTGAGGAAATAGAAATTTGGCCTATAATTAGAAAATTCTTCACAAACCAGGAGCAAGGGAAGATCATGGGATGCATGCTTGGAAGAATAAAGGCAGAAATATTACAAGATATGATACCTTGGCTAATGGCATCTTTGACACAGGATGAACAACATGTTTCAATGTTCTTATGGTCCATGGCTACTAAAAATACAATGTTTGCTGAATGGTTAGGTGAATGGTGGGATGGGTACAGTTTAGCAAAGGTAACAGAGGGCTCAAAAGATGTCCCTCTTCAGCCTGTTGAGCCACTGGAGATTATATCCAAATATTTATCTGAAGAAATTCTAAATGAATTACAAGAATCATCATCTGCCAACAAAAGCATAATTTTTTTGGAGAAGGATCGTATTGGTGATAATGTTGAGCTGTCTAACTACAACCACAATGATAAAGTTAAGGTTCATAATGCAGAAAAAAATAATAATCAATGTTCAAAACGCACAAATCAATTTCTCAATGATGACAAACATGTTTGCAATGAGGTAGCAGATATCATAAATCCGGTAGCCAATGAAGGTAAGTCGTCTAAACTTTGTGACGAGTCTGGGCGTTATGAACGACTTTTGAAATTGAGCCAAGATGATTTGGAGACGGTGATAAGAAGGGTGTCTCGGGACACTTGCTTAGATCCTCAGAAAAGGTCGTACATAATACAGAACCTACTGATGAGCCGTTGGATTATTAAACAGCAGATCTCTTCTACTGAAGTCAATGTAAAAAATGATAATCTGGAATTTTCTGGAAAGCATCCATCATACAGGGATCCTCTAAAACTAGTCTACGGCTGTAAACACTACAAGAGGAATTGTAAGCTTTTGGCTCCATGTTGCAACCAACTTCATACCTGCATACACTGTCATAACGACGAATCAGATCATTCAATTGATAGAAAATCTATTACAAAGATGATGTGTATGAAGTGCTTGATGATTCAACCAATCAGTGCCACATGCTCAACAGTTTCTTGCAATTTATCGATGGCAAAATATTACTGCAGAATCTGCAAATTATTTGATGATGAAAGGGAAATTTACCATTGTCCTTATTGTAACCTGTGCCGAGTTGGAAAGGGTTTGGGTGTAGACTACTTTCACTGTATGAGTTGCAATGCGTGTATGTCCCGTTCTCTTATGACGCATACATGCAGGGAGAAACATTTAGAGGACAACTGTCCAATTTGTCATGAATATATCTTCACATCCTGCTCTCCTGTAAAAGCCCTCCCATGTGGTCACGTGATGCACTCAACATGTTTTCAGGAATATACAAGATTTAATTACATCTGCCCCATATGTAGCAAGTCACTCGGAGACATGCAGGTATATTTTAGGATGTTAGATGCGTTATTGGCTGAAGAGAGTATTTCTGATCAGATGTCAGGTCAAACTCAGGTTATATTATGTAATGACTGTGAAAAGAAAGGAGAGACCCCCTTCCACTGGCTCTACCACAAATGCCCTAGCTGTGGTTCCTACAACACTAGAGTTCTGTGA 3378 0.3751 MIPKENISKLFQELVYSIGILQTYIYKHMLKEEKQVFPLLMQKLSTEEQASLVWLFICSVPIMFLEELFPWMVSFLSASKQSEVTQCINEIAPMETALQEVLVSWLRSNKQTFTETCFQSGEFQGVDGFLHIERSYRKTEEVSSLMEVNGQEIEDGVNQVNVLHLWHNAIKKDLKEILKELYLLRKSGCFQNLDSILIQVKFFADVLIFYSNALKKFFHPVLSKYANGWLSKSIETFLGESNIEDIQQQLLFYNSESGTSLSKFVEKLCQKLESFVSGVNKQFAFQENEVFPIFRENCRKGMQEGLLSLSLHMMPLGLLKCVITWFSVRLSEKESRSILYCIKKGNNSVCKAFSSLLHEWFRIGYSGKASIEKFRLDLQHMFKRRCFISPEEIKEAHRFSFINSEKQPHKVSDQNSLSCSSSSGSSNVNKYEIPYSTGINLHIFFPATVGKLHQYPALHAAERSSISFLDDPKPIDLIFFFHKAIKKDLEFLVLGSAELEKNDKLLTDFQKRFHLIYFLHQIHSDAEDEIVFPALEARGKLKNISHAYTFDHNHEVEHFNEISHILDKMSRLHLSISTIDSNIKEMGLLRYQHLCRKLQEMCKSMYTSLSNHIDREEIEIWPIIRKFFTNQEQGKIMGCMLGRIKAEILQDMIPWLMASLTQDEQHVSMFLWSMATKNTMFAEWLGEWWDGYSLAKVTEGSKDVPLQPVEPLEIISKYLSEEILNELQESSSANKSIIFLEKDRIGDNVELSNYNHNDKVKVHNAEKNNNQCSKRTNQFLNDDKHVCNEVADIINPVANEGKSSKLCDESGRYERLLKLSQDDLETVIRRVSRDTCLDPQKRSYIIQNLLMSRWIIKQQISSTEVNVKNDNLEFSGKHPSYRDPLKLVYGCKHYKRNCKLLAPCCNQLHTCIHCHNDESDHSIDRKSITKMMCMKCLMIQPISATCSTVSCNLSMAKYYCRICKLFDDEREIYHCPYCNLCRVGKGLGVDYFHCMSCNACMSRSLMTHTCREKHLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTRFNYICPICSKSLGDMQVYFRMLDALLAEESISDQMSGQTQVILCNDCEKKGETPFHWLYHKCPSCGSYNTRVL* 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02979 1125 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 519 641 - -
Phac3g02979 1125 Gene3D - 1090 1125 - -
Phac3g02979 1125 ProSiteProfiles Zinc finger RING-type profile. 1019 1061 IPR001841 -
Phac3g02979 1125 SMART ring_2 1019 1060 IPR001841 -
Phac3g02979 1125 ProSiteProfiles Zinc finger CHY-type profile. 884 953 IPR008913 GO:0008270
Phac3g02979 1125 ProSiteProfiles Zinc finger CTCHY-type profile. 955 1018 IPR017921 -
Phac3g02979 1125 FunFam Zinc finger protein-related isoform 1 1014 1063 - -
Phac3g02979 1125 Pfam CHY zinc finger 891 965 IPR008913 GO:0008270
Phac3g02979 1125 SUPERFAMILY RING/U-box 1008 1065 - -
Phac3g02979 1125 Pfam Zinc-ribbon 1066 1123 IPR039512 -
Phac3g02979 1125 CDD RING-H2_Pirh2-like 1018 1061 - -
Phac3g02979 1125 CDD Hr-like 476 622 - -
Phac3g02979 1125 SUPERFAMILY Zinc hairpin stack 956 1011 IPR037275 -
Phac3g02979 1125 SUPERFAMILY CHY zinc finger-like 882 948 IPR037274 GO:0008270
Phac3g02979 1125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1012 1063 IPR013083 -
Phac3g02979 1125 Pfam Hemerythrin HHE cation binding domain 474 623 IPR012312 -
Phac3g02979 1125 Gene3D nmb1532 protein domain like 3 57 - -
Phac3g02979 1125 Gene3D nmb1532 protein domain like 156 308 - -
Phac3g02979 1125 Gene3D nmb1532 protein domain like 470 642 - -
Phac3g02979 1125 Pfam Ring finger domain 1017 1060 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02979 Phac-Chr3 31301652 31310838 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02979 467 693 C2H2 Transcription Factor Family AT3G18290 25.862 1.44e-16 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02979 K16276 - gmx:100802706 2019.59