Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac3g02978 ATGGACGACGGCGATCCTTCCCTGTCCGATAAAGAGGAGGAGAACGATGAGGAAGACGTGGCGGACATTCTGTTGCGAATTCCGATCGTCGATGCTCCCATACTCATCTTCGTTTGCTTCCACAAGGCTTTTCGCTCTGAACTCGATCACCTTCGTCGCTTGGCGGAAACGGTGTCGTTGGAGGACGAGCCTCGCCGTTGCCAGCAAATGATCCTTCAGCTTCAACGCAGGTTCCAGTTTCTGAAACTAGCACATAAGTATCACTGTGCTGCGGAAGACGAGGTTATCTTTCATGCACTGGATGCTCATGTGAAAAATGTCGTTTGTACATATTCGCTTGAACATAAAAGCACCTCAGACCTTTTTGGATCTGTTTTTCACTCCTTGGAAGAGCTGATGATTCCTAAAGAGAATATTTCGAAGCTGTTCCAAGAACTCGTGTACAGTATTGGTATCTTGCAAACCTACATCTACAAACATATGCTGAAAGAAGAAAAGCAGGTTTTTCCCCTATTGATGCAGAAATTATCTACTGAAGAACAGGCCTCACTTGTGTGGCTATTCATATGTAGTGTTCCTATAATGTTTCTGGAGGAACTTTTTCCATGGATGGTATCCTTCCTTTCTGCAAGTAAGCAGTCAGAAGTTACCCAGTGTATAAATGAAATTGCACCAATGGAAACAGCACTGCAAGAGGTTTTGGTTTCTTGGCTTAGAAGCAACAAACAAACCTTTACTGAGACCTGTTTTCAGAGTGGAGAATTTCAAGGTGTTGATGGTTTCCTGCATATAGAAAGATCATATAGGAAAACCGAAGAAGTTTCAAGTCTAATGGAAGTGAATGGCCAAGAAATAGAAGATGGGGTCAACCAGGTTAATGTCCTTCATCTTTGGCATAATGCCATCAAGAAAGATTTGAAAGAAATTCTGAAAGAACTTTACCTACTAAGAAAATCAGGCTGTTTTCAGAATTTAGACTCAATACTTATCCAAGTGAAATTCTTTGCTGATGTCCTCATCTTCTACAGCAATGCTCTGAAGAAATTCTTTCATCCTGTACTGAGTAAATATGCTAATGGCTGGTTGTCCAAGTCTATTGAAACATTTCTAGGTGAAAGTAACATTGAAGATATACAACAACAGTTGCTATTCTATAACTCAGAAAGTGGAACATCTTTGAGCAAGTTCGTAGAGAAGCTTTGCCAAAAACTGGAATCATTTGTATCAGGAGTTAACAAACAATTTGCTTTTCAAGAAAATGAGGTATTTCCTATCTTTAGAGAGAACTGCAGAAAGGGAATGCAAGAGGGACTTCTAAGCTTGAGCCTACATATGATGCCTCTGGGGTTACTAAAATGTGTTATAACTTGGTTTTCAGTTAGATTGTCTGAAAAAGAGTCCAGGTCCATTCTCTATTGCATAAAGAAAGGAAACAATTCTGTCTGTAAAGCTTTTTCATCATTATTACATGAGTGGTTCCGCATTGGCTATTCAGGTAAAGCCTCTATTGAAAAATTCAGACTAGACTTGCAACATATGTTCAAAAGAAGATGCTTTATTTCACCTGAAGAAATTAAGGAAGCTCATAGATTTTCTTTCATAAATTCTGAGAAGCAGCCTCATAAAGTCTCTGACCAGAATTCTTTGTCCTGTTCTTCCTCATCTGGATCCAGTAATGTAAACAAGTATGAGATACCATACTCTACAGGAATTAATCTGCACATATTTTTTCCTGCTACAGTTGGGAAGTTACATCAGTATCCTGCATTACATGCAGCAGAACGATCTTCTATTTCCTTTCTTGATGATCCGAAACCAATTGACCTAATATTTTTCTTTCACAAAGCTATCAAGAAAGATTTGGAGTTCCTAGTTCTTGGCTCAGCCGAGCTAGAAAAAAATGATAAGTTGCTTACGGATTTCCAGAAACGATTCCATCTCATATATTTTCTTCATCAGATCCACAGTGATGCAGAGGATGAGATAGTTTTTCCAGCCTTGGAGGCAAGAGGAAAACTAAAAAACATTAGCCATGCTTACACTTTTGATCACAACCATGAAGTTGAACACTTCAATGAAATATCTCACATCCTTGATAAGATGTCTAGATTACATCTTTCAATTTCTACAATTGATTCAAATATAAAGGAGATGGGACTGCTAAGGTATCAGCATTTATGCAGGAAGCTGCAAGAAATGTGCAAATCAATGTATACATCGCTTTCCAATCATATAGACCGTGAGGAAATAGAAATTTGGCCTATAATTAGAAAATTCTTCACAAACCAGGAGCAAGGGAAGATCATGGGATGCATGCTTGGAAGAATAAAGGCAGAAATATTACAAGATATGATACCTTGGCTAATGGCATCTTTGACACAGGATGAACAACATGTTTCAATGTTCTTATGGTCCATGGCTACTAAAAATACAATGTTTGCTGAATGGTTAGGTGAATGGTGGGATGGGTACAGTTTAGCAAAGGTAACAGAGGGCTCAAAAGATGTCCCTCTTCAGCCTGTTGAGCCACTGGAGATTATATCCAAATATTTATCTGAAGAAATTCTAAATGAATTACAAGAATCATCATCTGCCAACAAAAGCATAATTTTTTTGGAGAAGGATCGTATTGGTGATAATGTTGAGCTGTCTAACTACAACCACAATGATAAAGTTAAGGTTCATAATGCAGAAAAAAATAATAATCAATGTTCAAAACGCACAAATCAATTTCTCAATGATGACAAACATGTTTGCAATGAGGTAGCAGATATCATAAATCCGGTAGCCAATGAAGGTAAGTCGTCTAAACTTTGTGACGAGTCTGGGCGTTATGAACGACTTTTGAAATTGAGCCAAGATGATTTGGAGACGGTGATAAGAAGGGTGTCTCGGGACACTTGCTTAGATCCTCAGAAAAGGTCGTACATAATACAGAACCTACTGATGAGCCGTTGGATTATTAAACAGCAGATCTCTTCTACTGAAGTCAATGTAAAAAATGATAATCTGGAATTTTCTGGAAAGCATCCATCATACAGGGATCCTCTAAAACTAGTCTACGGCTGTAAACACTACAAGAGGAATTGTAAGCTTTTGGCTCCATGTTGCAACCAACTTCATACCTGCATACACTGTCATAACGACGAATCAGATCATTCAATTGATAGAAAATCTATTACAAAGATGATGTGTATGAAGTGCTTGATGATTCAACCAATCAGTGCCACATGCTCAACAGTTTCTTGCAATTTATCGATGGCAAAATATTACTGCAGAATCTGCAAATTATTTGATGATGAAAGGGAAATTTACCATTGTCCTTATTGTAACCTGTGCCGAGTTGGAAAGGGTTTGGGTGTAGACTACTTTCACTGTATGAGTTGCAATGCGTGTATGTCCCGTTCTCTTATGACGCATACATGCAGGGAGAAACATTTAGAGGACAACTGTCCAATTTGTCATGAATATATCTTCACATCCTGCTCTCCTGTAAAAGCCCTCCCATGTGGTCACGTGATGCACTCAACATGTTTTCAGGAATATACAAGATTTAATTACATCTGCCCCATATGTAGCAAGTCACTCGGAGACATGCAGGTATATTTTAGGATGTTAGATGCGTTATTGGCTGAAGAGAGTATTTCTGATCAGATGTCAGGTCAAACTCAGGTTATATTATGTAATGACTGTGAAAAGAAAGGAGAGACCCCCTTCCACTGGCTCTACCACAAATGCCCTAGCTGTGGTTCCTACAACACTAGAGTTCTGTGA 3774 0.3871 MDDGDPSLSDKEEENDEEDVADILLRIPIVDAPILIFVCFHKAFRSELDHLRRLAETVSLEDEPRRCQQMILQLQRRFQFLKLAHKYHCAAEDEVIFHALDAHVKNVVCTYSLEHKSTSDLFGSVFHSLEELMIPKENISKLFQELVYSIGILQTYIYKHMLKEEKQVFPLLMQKLSTEEQASLVWLFICSVPIMFLEELFPWMVSFLSASKQSEVTQCINEIAPMETALQEVLVSWLRSNKQTFTETCFQSGEFQGVDGFLHIERSYRKTEEVSSLMEVNGQEIEDGVNQVNVLHLWHNAIKKDLKEILKELYLLRKSGCFQNLDSILIQVKFFADVLIFYSNALKKFFHPVLSKYANGWLSKSIETFLGESNIEDIQQQLLFYNSESGTSLSKFVEKLCQKLESFVSGVNKQFAFQENEVFPIFRENCRKGMQEGLLSLSLHMMPLGLLKCVITWFSVRLSEKESRSILYCIKKGNNSVCKAFSSLLHEWFRIGYSGKASIEKFRLDLQHMFKRRCFISPEEIKEAHRFSFINSEKQPHKVSDQNSLSCSSSSGSSNVNKYEIPYSTGINLHIFFPATVGKLHQYPALHAAERSSISFLDDPKPIDLIFFFHKAIKKDLEFLVLGSAELEKNDKLLTDFQKRFHLIYFLHQIHSDAEDEIVFPALEARGKLKNISHAYTFDHNHEVEHFNEISHILDKMSRLHLSISTIDSNIKEMGLLRYQHLCRKLQEMCKSMYTSLSNHIDREEIEIWPIIRKFFTNQEQGKIMGCMLGRIKAEILQDMIPWLMASLTQDEQHVSMFLWSMATKNTMFAEWLGEWWDGYSLAKVTEGSKDVPLQPVEPLEIISKYLSEEILNELQESSSANKSIIFLEKDRIGDNVELSNYNHNDKVKVHNAEKNNNQCSKRTNQFLNDDKHVCNEVADIINPVANEGKSSKLCDESGRYERLLKLSQDDLETVIRRVSRDTCLDPQKRSYIIQNLLMSRWIIKQQISSTEVNVKNDNLEFSGKHPSYRDPLKLVYGCKHYKRNCKLLAPCCNQLHTCIHCHNDESDHSIDRKSITKMMCMKCLMIQPISATCSTVSCNLSMAKYYCRICKLFDDEREIYHCPYCNLCRVGKGLGVDYFHCMSCNACMSRSLMTHTCREKHLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTRFNYICPICSKSLGDMQVYFRMLDALLAEESISDQMSGQTQVILCNDCEKKGETPFHWLYHKCPSCGSYNTRVL* 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac3g02978 1257 Gene3D nmb1532 protein domain like 288 440 - -
Phac3g02978 1257 Gene3D nmb1532 protein domain like 602 774 - -
Phac3g02978 1257 Gene3D nmb1532 protein domain like 32 189 - -
Phac3g02978 1257 CDD Hr-like 36 170 - -
Phac3g02978 1257 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 885 1257 - -
Phac3g02978 1257 CDD Hr-like 608 754 - -
Phac3g02978 1257 SUPERFAMILY CHY zinc finger-like 1014 1080 IPR037274 GO:0008270
Phac3g02978 1257 SUPERFAMILY Zinc hairpin stack 1088 1143 IPR037275 -
Phac3g02978 1257 Pfam Zinc-ribbon 1198 1255 IPR039512 -
Phac3g02978 1257 ProSiteProfiles Zinc finger RING-type profile. 1151 1193 IPR001841 -
Phac3g02978 1257 FunFam Zinc finger protein-related isoform 1 1146 1195 - -
Phac3g02978 1257 Pfam Ring finger domain 1149 1192 IPR001841 -
Phac3g02978 1257 ProSiteProfiles Zinc finger CHY-type profile. 1016 1085 IPR008913 GO:0008270
Phac3g02978 1257 ProSiteProfiles Zinc finger CTCHY-type profile. 1087 1150 IPR017921 -
Phac3g02978 1257 Pfam CHY zinc finger 1023 1097 IPR008913 GO:0008270
Phac3g02978 1257 CDD RING-H2_Pirh2-like 1150 1193 - -
Phac3g02978 1257 Pfam Hemerythrin HHE cation binding domain 606 755 IPR012312 -
Phac3g02978 1257 Gene3D - 1222 1257 - -
Phac3g02978 1257 SUPERFAMILY RING/U-box 1140 1197 - -
Phac3g02978 1257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1144 1195 IPR013083 -
Phac3g02978 1257 SMART ring_2 1151 1192 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac3g02978 Phac-Chr3 31301652 31312711 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac3g02978 599 825 C2H2 Transcription Factor Family AT3G18290 25.862 1.95e-16 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac3g02978 K16276 - gmx:100802706 2231.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac3g02978 3 31301652 31312711 Phac3g02978 3 31301652 31312711 ECH